Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,408,078 – 10,408,173 |
Length | 95 |
Max. P | 0.529939 |
Location | 10,408,078 – 10,408,173 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -30.06 |
Consensus MFE | -21.85 |
Energy contribution | -21.37 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.13 |
Mean z-score | -1.51 |
Structure conservation index | 0.73 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10408078 95 - 22224390 UGGCGCUGGAUUAGCGUAGUCGGGAAAAUGCGAGGAAAAUAGGUUGGGACGGAG----------------G-AAAACCAAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG .((((((...(((((....(((........)))........(((((((((...(----------------(-....))....))))))))).)))))....)).)))).... ( -27.90) >DroSec_CAF1 50555 95 - 1 UGGCGCUGGAUUAGCGUAGUCGGGAAAAUGCGAGGGAAAUAGGUUGGGACAGCG----------------G-AAAACCAAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG .((((((...(((((....(((........)))........(((((((((...(----------------(-....))....))))))))).)))))....)).)))).... ( -26.80) >DroSim_CAF1 31850 95 - 1 UGGCGCUGGAUUAGCGUGGUCGGGAAAAUGCGAGGGAAAUAGGUUGGGACGGCG----------------G-AAAACCAAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG .((((((...(((((....(((........)))........(((((((((...(----------------(-....))....))))))))).)))))....)).)))).... ( -27.90) >DroEre_CAF1 55125 108 - 1 UGGCGCUGGAUUAGCGUAGUCGGGAAAAUGCAGGGAAAAUAUGCUGGGCCGGGG----AAAACCAAGCCGGGGACACCUAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG .((((((...(((((.((((.((((...((.(((............(((..((.----....))..)))(....).))).)).)))).)))))))))....)).)))).... ( -35.40) >DroYak_CAF1 51720 111 - 1 UGGCGCUGGAUUAGCGUAGUCGUCGAAAUGCAGGGAAAAUAUUUUGGAACUGGGGCCAAAAACCAAACCGG-GAAACCUAUAGUCUCAGCUGGCUGGAAAAAGCCGUCGUAG .((((((((((((((((..........)))).((.......((((((........))))))......))((-....))..))))).)))).((((......))))))).... ( -32.32) >consensus UGGCGCUGGAUUAGCGUAGUCGGGAAAAUGCGAGGAAAAUAGGUUGGGACGGCG________________G_AAAACCAAUAGUCUCAGCUGGCUGGAAAAAGUCGCCGGAG .((((((((((((((((..(....)..))))..............((.............................))..))))).)))).((((......))))))).... (-21.85 = -21.37 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:10 2006