Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,393,768 – 10,393,883 |
Length | 115 |
Max. P | 0.962979 |
Location | 10,393,768 – 10,393,883 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 69.09 |
Mean single sequence MFE | -25.47 |
Consensus MFE | -12.62 |
Energy contribution | -13.41 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.18 |
Mean z-score | -2.28 |
Structure conservation index | 0.50 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10393768 115 - 22224390 GGGGGAAAUCGUCUACAGGAGUUGCCCCAUAAAGGGCACAGUUGUUAUGCUUUAUGUGUUCCUAAUUGGUUGAAGACAUUUAUUUUAUAAACCAAUUCUUGAAUAUAAUAAAAUU ((((.((.((........)).)).))))....((((((.........)))))).(((((((..((((((((.((((......))))...))))))))...)))))))........ ( -25.80) >DroSec_CAF1 37787 98 - 1 GGGCGAAAUCAUCUACAGGAGUCGCCCAAUAAAGGGCACAGUAGUUAUGCUUUAUGUGUUCUUAAUUGGUUAAAGACA---ACUUUAGAAA-------------AU-AUAUAAUU ((((((..((.......))..))))))....(((((((((..((.....))...))))))))).(((..((((((...---.))))))..)-------------))-........ ( -26.60) >DroEre_CAF1 42393 90 - 1 GAGC-GAAUCGUUUACAGGAGUCGCCCGAUAAAGGACACA-----UGUGUUUCAUGUGUUCUUCAUGGGUUAAAGAAA-UUAUUUUAUAAG-------------CA-AAAU---- ..((-((.((........)).))))((.((.(((((((((-----((.....))))))))))).)).)).........-............-------------..-....---- ( -24.00) >consensus GGGCGAAAUCGUCUACAGGAGUCGCCCAAUAAAGGGCACAGU_GUUAUGCUUUAUGUGUUCUUAAUUGGUUAAAGACA_UUAUUUUAUAAA_____________AU_AUAUAAUU ((((((..((.......))..))))))....(((((((((..............))))))))).................................................... (-12.62 = -13.41 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:07 2006