| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,382,369 – 10,382,479 |
| Length | 110 |
| Max. P | 0.605385 |
| Location | 10,382,369 – 10,382,479 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.54 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -14.87 |
| Energy contribution | -15.21 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10382369 110 - 22224390 ACA----AGACUUUUAAGUUGCAAGAAUCGCAUCUUAAGCCUAAGCUGCCCAUCCAUAAAAAAAAGCCCCAAAUGAAAGCCCCAUUUGGGGUUAUGGACUUUCGUAAUAAGAAU ...----..........(((((.......(((.((((....)))).)))...((((((.......((((((((((.......)))))))))))))))).....)))))...... ( -28.41) >DroSec_CAF1 26590 110 - 1 ACAGCUAUAGCUUUUAAGUUGUAAGAAACGCAUCUCAAGACUAAGCCU-CCAUCCAUAA---AAAGCCUCAAAUGAAGGCCCCAUUUGGGGCUAUGGACUUUCGUAAUAAGAAU ...(((.(((.((((.((.(((.......))).)).))))))))))..-...(((((..---..(((((((((((.......))))))))))))))))................ ( -26.30) >DroEre_CAF1 30696 103 - 1 CCC----AGACUUUUUAAUUGUUAGAACGCCAUCUUAAGCCUAAGC---CCAGCUAUAA---AAAGC-CCCAAUGAAAGCCCCAUUUGGGGUUAUGGACUUUCGUAAUAAGAAU ...----...........(((((((((.(((((....(((......---...)))....---..(((-(((((((.......)).)))))))))))).).))).)))))).... ( -20.00) >consensus ACA____AGACUUUUAAGUUGUAAGAAACGCAUCUUAAGCCUAAGC___CCAUCCAUAA___AAAGCCCCAAAUGAAAGCCCCAUUUGGGGUUAUGGACUUUCGUAAUAAGAAU ................................(((((................(((((.......((((((((((.......)))))))))))))))((....))..))))).. (-14.87 = -15.21 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:02 2006