Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,367,128 – 10,367,246 |
Length | 118 |
Max. P | 0.569410 |
Location | 10,367,128 – 10,367,246 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.60 |
Mean single sequence MFE | -20.34 |
Consensus MFE | -15.32 |
Energy contribution | -14.88 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.28 |
Mean z-score | -1.32 |
Structure conservation index | 0.75 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10367128 118 - 22224390 CGGUUAGAUCGCAAAUGCAGUGCAGCAACACUGAGAGG-AAAAUAUGUUUA-AAUCAAUUGGAAUAUGCUAAUCCAUAAUCCAAAAAAAAAAAAAAAAAAACAGAACCAAUAGCUAAUAA .((((............(((((......))))).....-............-......(((((.((((......)))).)))))....................))))............ ( -17.30) >DroSec_CAF1 18610 105 - 1 CGGCUGGAUGGCAAAUGCAGUGCAGCUACACUGAGAAG-AAAAUAUGUUUA-AAUCGGUUGGAAUAUGCUAAGCCAUAAUCCAUAA-------------AAUAGAACCAAUAGCUAAUAA .(((((.((.((....)).)).)))))..(((((...(-((......))).-..)))))((((.((((......)))).))))...-------------..................... ( -20.10) >DroSim_CAF1 18915 105 - 1 CGGCUGGAUCGCAAAUGCAGUGCAGCUACACUGAGAGG-AAAAUAUGUUUA-AAUCGGUUGGAAUAUGAUAAGCCAUAAUCCAAAA-------------AAUAGAACCAAUAGCUAAUAA .(((((.((.((....)).)).)))))..(((((...(-((......))).-..)))))((((.((((......)))).))))...-------------..................... ( -22.20) >DroEre_CAF1 22428 105 - 1 UGGCUAGAUCACAAAUGCAGUGCAGCUACACUGGGAGGAAAAAUCUGUUGA-AAUCAGCUGGAAUGUGCUAAGCCAUUAUCCAUAA-------------AACAAAGCCAGUGGU-CAUAA ......((((((...(.(((((......))))).).((........((((.-...))))(((((((.((...)))))..))))...-------------.......)).)))))-).... ( -24.00) >DroYak_CAF1 18014 103 - 1 UGGCUAGAUCACAAAUGCAGUGCAGCUACACUGGGGAGGAAAAUAUGCUAAAAAGCAGUUGGAAUGUGCUUAUUCAUAAUCCAUAA-------------AACAAAGUAAAUAGU-AA--- ..((((....((...(.(((((......))))).)..(((.....((((....))))....(((((....)))))....)))....-------------......))...))))-..--- ( -18.10) >consensus CGGCUAGAUCGCAAAUGCAGUGCAGCUACACUGAGAGG_AAAAUAUGUUUA_AAUCAGUUGGAAUAUGCUAAGCCAUAAUCCAUAA_____________AACAGAACCAAUAGCUAAUAA .(((((...........(((((......)))))..........................((((.((((......)))).))))...........................)))))..... (-15.32 = -14.88 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:01 2006