Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,361,639 – 10,361,736 |
Length | 97 |
Max. P | 0.702655 |
Location | 10,361,639 – 10,361,736 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.30 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -14.84 |
Energy contribution | -14.70 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.11 |
Mean z-score | -2.52 |
Structure conservation index | 0.58 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.702655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10361639 97 - 22224390 -------UUUUGGCCAUCGGCCAUUUAAUGGCGUAUUUUAUGUGUUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUU-CAACCAUUU-UAGACCAU -------...(((((...)))))...((((((..............((((((.....))))))((((((.....)))))))))))).-.........-........ ( -23.70) >DroPse_CAF1 7894 103 - 1 UCUGGUCUGCUGGCCAUCGGGCAUUUAAUGGCAUAUUUUAUGUGCCGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUU-GU-CCGUUU-UGGGACAU ..(((((....)))))...(((.......(((((((...)))))))((((((.....))))))((((((.....)))))))))...(-((-((....-..))))). ( -34.80) >DroSec_CAF1 13236 95 - 1 ---------UAGGCCAUCGGCCAUUUAAUGGCGUAUUUUAUGUGUUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUCCCAUUU-CAAACAUUU-UAGACCAU ---------..((((...)))).....((((.....((((.(((((((((((.....))))))((((((.....)))))).......-..)))))..-)))))))) ( -19.70) >DroSim_CAF1 13568 97 - 1 -------UUUUGGCCAUCGGCCAUUUAAUGGCGUAUUUUAUGUGUUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUCCCAUUU-CAAACAUUU-UAGACCAU -------...(((((...)))))....((((.....((((.(((((((((((.....))))))((((((.....)))))).......-..)))))..-)))))))) ( -20.20) >DroAna_CAF1 6560 87 - 1 -----------GACCAUCGGCCAUUUAAUGGCAUAUUUUAUGUUCUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUUUCGGACAUAUC-------- -----------........(((((...)))))......(((((((.((((((.....))))))((((((.....)))))).........)))))))..-------- ( -21.40) >DroPer_CAF1 8103 103 - 1 UCUGGACUGCUGGCCAUCGGGCAUUUAAUGGCAUAUUUUAUGUGCCGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUU-GU-CCGUUU-UCGGACAU ..(((.(....).)))...(((.......(((((((...)))))))((((((.....))))))((((((.....)))))))))...(-((-(((...-.)))))). ( -32.50) >consensus _______U_UUGGCCAUCGGCCAUUUAAUGGCAUAUUUUAUGUGCUGGCUUAUUACUUGAGCUGAAUGUUUAUUGCAUUUGCCAUUU_CAAACAUUU_UAGACCAU ..........................(((((((............(((((((.....)))))))(((((.....)))))))))))).................... (-14.84 = -14.70 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:00 2006