Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,343,737 – 10,343,846 |
Length | 109 |
Max. P | 0.557428 |
Location | 10,343,737 – 10,343,846 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.87 |
Mean single sequence MFE | -42.67 |
Consensus MFE | -27.92 |
Energy contribution | -27.40 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.35 |
Mean z-score | -1.34 |
Structure conservation index | 0.65 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557428 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10343737 109 - 22224390 CAGGCGA------GCACUUUUCAGACAUUCGCCAAGCGAUUGUCGCCGGAGGGCGAGUGUAAGGACACGCUGUCCUCGCAGGGAUCCUCUUCUAACGAUAGUCGCUGGCCGCC-GC- ..((((.------..........(.....)((((.((((((((((..((((((.((.((..(((((.....)))))..))....)).))))))..))))))))))))))))))-..- ( -46.10) >DroVir_CAF1 8886 116 - 1 CAGGCCAGCACCAGCACGUUCCAGACCUUCGCCAAGCGUCUGUCGCCCGAGGGCGAGUGCAAAGAUACGCUCUCCUCGCAGGGCUCCUCCUCCAAUGACAGUCGCUGGCAGUC-ACA ...((((((....((((....((((((((....))).)))))(((((....)))))))))........(((((......)))))...................))))))....-... ( -41.60) >DroGri_CAF1 8189 116 - 1 CAGGCCAGCACCAGCACGUUCCAGACCUUUGCAAAGCGUCUAUCGCCCGAAGGCGAGUGCAAGGAUACGCUCUCAUCGCAAGGCUCCUCCUCCAAUGAUAGCCGCUGGCAAUC-UCA ...((((((.((.((((.....(((((((....))).)))).(((((....)))))))))..))....(((.((((.(..(((.....))).).)))).))).))))))....-... ( -39.50) >DroWil_CAF1 7084 109 - 1 CAAUCGA------GCACGUUCCAGACAUUUGCCAAGCGUCUGUCACCGGAGGGGGAAUGCAAGGAUACCAUCUCAUCGCAGGGCUCCUCCUCGACGGACAGUCGCUGGCAAUC-GA- ...((((------....(((...)))..((((((.(((.(((((....((((((((.(((...((.......))...)))....))))))))....))))).)))))))))))-))- ( -41.70) >DroMoj_CAF1 7899 116 - 1 CAGGCCAGCACCAGCACGUUCCAGACCUUCGCCAAGCGCCUGUCGCCCGAGGGCGAGUGCAAGGAUACGCUCUCAUCGCAGGGCUCCUCCUCGAACGACAGUCGCUGGCAGUC-GCA ...((..((....))........(((....((((.(((.((((((..((((((.((((.(..(....)((.......)).).)))).))))))..)))))).))))))).)))-)). ( -44.30) >DroAna_CAF1 8401 110 - 1 CCCGGUU------CCACGUUCCAGACCUUCGCCAAGCGACUGUCGCCGGAGGGCGAGUGCAAGGACACCCUCUCCUCGCAGGGCUCCUCCUCGAACGAUGGCCGCUGGCCGGUGGC- .((((((------((((((((..(((..((((...))))..)))...(((((((...(((.((((.......)))).)))..)).)))))..))))).))).....))))))....- ( -42.80) >consensus CAGGCCA______GCACGUUCCAGACCUUCGCCAAGCGUCUGUCGCCCGAGGGCGAGUGCAAGGAUACGCUCUCAUCGCAGGGCUCCUCCUCGAACGACAGUCGCUGGCAGUC_GC_ ..............................((((.(((.(((((((..(((((((.((......)).)))))))...)).(((.....))).....))))).)))))))........ (-27.92 = -27.40 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:58 2006