Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,335,575 – 10,335,665 |
Length | 90 |
Max. P | 0.959122 |
Location | 10,335,575 – 10,335,665 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -28.33 |
Consensus MFE | -20.70 |
Energy contribution | -22.33 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.14 |
Mean z-score | -2.38 |
Structure conservation index | 0.73 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10335575 90 - 22224390 CAUA--UAUGCAAACACGAGCAUGCCAUCUGGGGGUAUAAUCCAUUUGGUGUGGAUCGUGUGUGCCACCCUGGAGACCAAAAGCACAGUUCA ....--.......((((((.(((((((..((((.......))))..)))))))..))))))((((......(....).....))))...... ( -27.90) >DroSec_CAF1 7600 90 - 1 CAUA--UAUGCAAACACGAGCAUGCCAUCUGGGCGUAUAUUCCAUUUGGUGUGGAUCGUGUGUGCCACCCUGGAGACCAAAAGCACAGUUCA ....--.......((((((.(((((((..((((.......))))..)))))))..))))))((((......(....).....))))...... ( -27.20) >DroEre_CAF1 7792 92 - 1 CAUAUAUAUGCAAACGCGAGCACGCCAUUUGGGCGUAUAAACCAUUUGGCGUGGAUCGUGUGUGCCACCCUGGAGACCAAAAGCACAGUUCA .............((((((.(((((((..(((.........)))..)))))))..))))))((((......(....).....))))...... ( -32.20) >DroYak_CAF1 7425 73 - 1 CAUA--UAUGCAGACACGAUCCAGA-----------------CAUUUGGUGUGGAUCGUGUGUGCCAUCCUGGAGACCAAAAGCACAGUUCA ....--...(((.((((((((((.(-----------------(.....)).)))))))))).)))....(((.............))).... ( -26.02) >consensus CAUA__UAUGCAAACACGAGCAUGCCAUCUGGGCGUAUAAUCCAUUUGGUGUGGAUCGUGUGUGCCACCCUGGAGACCAAAAGCACAGUUCA .............((((((.(((((((..((((.......))))..)))))))..))))))((((......(....).....))))...... (-20.70 = -22.33 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:53 2006