| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,331,074 – 10,331,191 |
| Length | 117 |
| Max. P | 0.575776 |
| Location | 10,331,074 – 10,331,191 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.55 |
| Mean single sequence MFE | -41.45 |
| Consensus MFE | -20.03 |
| Energy contribution | -20.62 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10331074 117 + 22224390 GGUGCCACCGGUGGCAUUGCCGUUGCCAUUGCCAUUGG---CCAUUUUGGUGAGCAGCGAUUUGGGCAGCGAGGCAUUGGUCAGCAGGUUAUUCUUGGCUAUCAGGGUGACCAGCGGCAG .((((((....))))))(((((((((((.((((.(((.---(((..(((.(....).)))..))).)))...)))).))).)))).(((((((((........)))))))))...)))). ( -49.90) >DroVir_CAF1 2514 108 + 1 G---CCAACGGCGGCG---------CCAUGCCCAUUGGCCAACUGUUUGCUGAGCAGCGAUUUGGGCAGCGACGAGUUGGUCAACAGAUUGUUUUUGGCUAUCAACGUGACCAGCGGCAG (---((.....((.((---------(..((((((........((((((...)))))).....))))))))).)).((((((((...(((.((.....)).)))....))))))))))).. ( -38.62) >DroPse_CAF1 6751 96 + 1 G---CCAUGU---------------CCACCGCCA---G---CCUGCUUGGCCAGCAGCGACUUGGGCAGCGAGCAGUUGGUCAGCAGAUUGUUCUUGGCGAUCAGGGUGACCAGCGGCAG (---((.(((---------------(((.(((..---(---((.....))).....)))...)))))).......((((((((.(.((((((.....))))))..).))))))))))).. ( -39.90) >DroGri_CAF1 8616 93 + 1 G---CCA--------------------UUGCCCGUUG----UCUGCUUGGUGAGCAGCGAUUUGGGUAGCGAUGAGCUGGUCAGCAGAUUGUUUUUGGCAAUCAGCGUGACCAGCGGCAG (---((.--------------------((((((((((----.((((((...))))))))))..))))))......((((((((((.((((((.....)))))).)).))))))))))).. ( -46.10) >DroEre_CAF1 3009 99 + 1 GGAGCCAGCAG------------------CGGUAUUGG---CCAUUUUGGUCAGCAGCGACUUGGGCAGCGAUGCGUUGGUCAGCAGGUUGUUCUUGGCGAUCAGGGUGACCAGCGGCAG ...(((.(((.------------------((...(((.---(((....((((......))))))).))))).)))((((((((.(.((((((.....))))))..).))))))))))).. ( -39.10) >DroYak_CAF1 2920 102 + 1 GGAGCCACCAUU---------------AUUGCCAUUGG---CCAUUUUGGUGAGCAGCGACUUGGGCAGCGAUGCAUUGGUCAGCAGGUUGUUCUUGGCGAUCAAAGUGACCAGCGGCAG ((.....))...---------------..((((.((((---.(((((((((..((...((((...(((....)))...))))..((((.....)))))).))))))))).)))).)))). ( -35.10) >consensus G___CCACCAG________________AUCGCCAUUGG___CCAGUUUGGUGAGCAGCGACUUGGGCAGCGAUGAGUUGGUCAGCAGAUUGUUCUUGGCGAUCAGGGUGACCAGCGGCAG ..............................(((....................((.((.......)).)).....((((((((...((((((.....))))))....))))))))))).. (-20.03 = -20.62 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:51 2006