Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,330,138 – 10,330,231 |
Length | 93 |
Max. P | 0.807642 |
Location | 10,330,138 – 10,330,231 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -26.23 |
Consensus MFE | -18.05 |
Energy contribution | -19.43 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.09 |
Mean z-score | -1.90 |
Structure conservation index | 0.69 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10330138 93 + 22224390 -----------------GAUUGGGAUCCACUACACUUGCAGAAAAGGAAUGGCAGAGGGUAA-AACCCAAUCAACUCCCAAAUAAAUCAAGCAA-AGAGACGCCUCUGCGUC -----------------..((((((((..(((..(((......)))...)))..))(((...-..))).......)))))).............-...(((((....))))) ( -21.00) >DroSec_CAF1 2061 93 + 1 -----------------GAUUGGGAUCCACUGUACUUGCAGAAAAGGAAUGGCAGAGGACAA-AACCCAAUCAACUCCCAAAUAAAUCAAGCAA-AGAGACGCCUCUGCGUC -----------------(((((((.(((.((((.(((......))).....)))).)))...-..)))))))......................-...(((((....))))) ( -24.40) >DroEre_CAF1 2096 107 + 1 ---UAUGGGAGAUGGGAGAUGGGGAGCCACUACACUUGCAGAAAGGGAAUGGCAGAGGGUAA-AACCCAAUCAACUCCCAAAUAAAUCAAGUAA-AGAGACGCCUCUGCGUC ---..(((.(..((((((.(((...((((...(.(((.....))))...))))...(((...-..)))..))).))))))..)...))).....-...(((((....))))) ( -30.50) >DroYak_CAF1 2081 112 + 1 GGGAGAGCGGGAUUGGUGAUGGGGAGCCAAUACACUUGCAGAAAUGGAAUGGCAGAGGGUAAAAACCCAAUCAAUUCCCUAAUAAAUCAAGUAAAAGAGAAGCCUCUGCGUC ......((....(((((..((((((((((......((.((....)).))))))...((((....)))).......))))))....))))).....((((....))))))... ( -29.00) >consensus _________________GAUGGGGAGCCACUACACUUGCAGAAAAGGAAUGGCAGAGGGUAA_AACCCAAUCAACUCCCAAAUAAAUCAAGCAA_AGAGACGCCUCUGCGUC ...................((((((((((.....(((......)))...))))...((((....)))).......)))))).................(((((....))))) (-18.05 = -19.43 + 1.38)
Location | 10,330,138 – 10,330,231 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -22.72 |
Energy contribution | -22.09 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.27 |
Mean z-score | -1.63 |
Structure conservation index | 0.85 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10330138 93 - 22224390 GACGCAGAGGCGUCUCU-UUGCUUGAUUUAUUUGGGAGUUGAUUGGGUU-UUACCCUCUGCCAUUCCUUUUCUGCAAGUGUAGUGGAUCCCAAUC----------------- (((((....)))))...-.............((((((((.((..(((..-...))))).))...(((....((((....)))).)))))))))..----------------- ( -26.00) >DroSec_CAF1 2061 93 - 1 GACGCAGAGGCGUCUCU-UUGCUUGAUUUAUUUGGGAGUUGAUUGGGUU-UUGUCCUCUGCCAUUCCUUUUCUGCAAGUACAGUGGAUCCCAAUC----------------- (((((....)))))...-...((..(.....)..))....(((((((..-..((((.(((...((.(......).))...))).)))))))))))----------------- ( -24.60) >DroEre_CAF1 2096 107 - 1 GACGCAGAGGCGUCUCU-UUACUUGAUUUAUUUGGGAGUUGAUUGGGUU-UUACCCUCUGCCAUUCCCUUUCUGCAAGUGUAGUGGCUCCCCAUCUCCCAUCUCCCAUA--- (((((....)))))...-..............((((((.((...(((..-...)))...((((((.((((.....))).).))))))....)).)))))).........--- ( -30.80) >DroYak_CAF1 2081 112 - 1 GACGCAGAGGCUUCUCUUUUACUUGAUUUAUUAGGGAAUUGAUUGGGUUUUUACCCUCUGCCAUUCCAUUUCUGCAAGUGUAUUGGCUCCCCAUCACCAAUCCCGCUCUCCC ((.((((((....))))................((((.(((...((((....))))...((((...(((((....)))))...))))..........))))))))))).... ( -25.50) >consensus GACGCAGAGGCGUCUCU_UUACUUGAUUUAUUUGGGAGUUGAUUGGGUU_UUACCCUCUGCCAUUCCUUUUCUGCAAGUGUAGUGGAUCCCAAUC_________________ (((((....))))).....((((((........((((((.(...((((....))))....).))))))......))))))................................ (-22.72 = -22.09 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:50 2006