Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,327,922 – 10,328,022 |
Length | 100 |
Max. P | 0.976784 |
Location | 10,327,922 – 10,328,022 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.57 |
Mean single sequence MFE | -37.88 |
Consensus MFE | -16.10 |
Energy contribution | -16.90 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.25 |
Mean z-score | -2.40 |
Structure conservation index | 0.43 |
SVM decision value | 1.78 |
SVM RNA-class probability | 0.976784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10327922 100 - 22224390 UGUCCGGGAGCGC---GAGCGGAGCAUCGACCGAUCUGGU---AUCGGAUUUGGAGCGGACACAGAGAUACGAAAUC-----GAUAUCGGAUUGGGAAU------CGGAGGC--GGAAG- ..(((....((..---..))...((.((((((((((((((---(((((.((((...(.........)...)))).))-----)))))))))))))...)------)))..))--)))..- ( -36.00) >DroSec_CAF1 6092 100 - 1 UGUCUGGGAGCGC---GAGCGGAGCGUCGACCGAUCCGGU---AUCGGAUUUGGAGCGGACACAGAGAUACGAAAUC-----GAUAUCGGAUUGGGAAU------CGGAGGC--GGAAG- .((((....((..---..))....((....((((((((((---(((((.((((...(.........)...)))).))-----)))))))))))))....------)).))))--.....- ( -36.30) >DroAna_CAF1 7342 107 - 1 -------GAGCGUACAAAACGGAGCGUCGGCCGUUGCGAUUCGAUGCGGUUCGGUUCGGUUGCGGGGAAACGGAAACGAACUGACAUCGGAUAUUGGAA------CGGAAACACGGCAAU -------..((...(.....)..))((((.(((((.(((((((((((((((((.(((.(((.......))).))).))))))).)))))))..))).))------))).....))))... ( -40.40) >DroSim_CAF1 5534 100 - 1 UGUCCGGGAGCGC---GAGCGGAGCGUCGACCGAUCCGGU---AUCGGAUUUGGAGCGGACACAGAGAUACGAAAUC-----GAUAUCGGAUUGGGAAU------CGGAGGC--GGAAG- ..(((....((..---..))...((.((((((((((((((---(((((.((((...(.........)...)))).))-----)))))))))))))...)------)))..))--)))..- ( -39.00) >DroEre_CAF1 6423 106 - 1 UAUCCGGGAGCGC---GAGCGGAGCGUCGAUCGAUCCGGU---AUCGGAUUUGGAGCGGACACAGAGACACGAAAUC-----GAUAUCGGAUUGGGAAUCGGAAUCGGAGGC--GGAAG- ..((((...((..---..)).((...((((((((((((((---(((((.((((...(.........)...)))).))-----))))))))))))...)))))..)).....)--)))..- ( -37.70) >consensus UGUCCGGGAGCGC___GAGCGGAGCGUCGACCGAUCCGGU___AUCGGAUUUGGAGCGGACACAGAGAUACGAAAUC_____GAUAUCGGAUUGGGAAU______CGGAGGC__GGAAG_ ..((((....(((.....))).........((((((((((.......(((((.(..(.........)...).)))))........))))))))))..........))))........... (-16.10 = -16.90 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:49 2006