Locus 3873

Sequence ID X_DroMel_CAF1
Location 10,324,714 – 10,324,831
Length 117
Max. P 0.628880
window6368

overview

Window 8

Location 10,324,714 – 10,324,831
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.99
Mean single sequence MFE -33.41
Consensus MFE -23.52
Energy contribution -24.04
Covariance contribution 0.52
Combinations/Pair 1.13
Mean z-score -1.90
Structure conservation index 0.70
SVM decision value 0.20
SVM RNA-class probability 0.628880
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10324714 117 + 22224390
---CUAAAUGGUCACCAUGGAAAACAGCGACGAGAUAAUGCAGAUCCUAGAGCGCUUUACGGAUCUUAAACAAAAGGAGAUCCCAAAGGAGCUGGAGGAGUACCUACAGUAUGUGGCCAA
---.....(((((((..((.....))...........((((...((((..(((.((((..(((((((.........)))))))..)))).)))..))))((....)).))))))))))). ( -31.90)
>DroSec_CAF1 2907 116 + 1
---CUA-AUGGUCACCAUGGAAAACAGCGAGGAGAUAAUGCAGAUCCUGGAGCGCUUCACGGAUCUUAAGCAAAAGGAAAUCCCAAAAGAGCUGGAGGAAUACCUACAGUAUGUGGCCAA
---...-.(((((((..((.....((((..........(((((((((((((....)))).))))))...)))...((.....))......)))).(((....))).))....))))))). ( -32.80)
>DroAna_CAF1 3980 120 + 1
CUCUCAAAUGGUCACCAUGGAGAACAGCGACGAGAUUCUGCAGAUCCUGGAGCGCUUCACCCGCCUAAAGCAAAAGGAGAUACCCAAAGAGCUGGAGGACUAUCUGCAAUAUGUCGCUAA
.((((..((((...)))).))))..(((((((......((((((((((..(((((((..........))))....((......)).....)))..))))...))))))...))))))).. ( -35.10)
>DroSim_CAF1 2668 117 + 1
---CUAAAUGGUCACCAUGGAAAACAGCGAGGAGAUAAUGCAGAUCCUGGAGCGCUUCACGGAUCUUAAGCAAAAGGAAAUCCCAAAGGAGCUGGAGGAAUACCUACAGUAUGUGGCCAA
---.....(((((((..((.....((((..........(((((((((((((....)))).))))))...)))........(((....))))))).(((....))).))....))))))). ( -33.40)
>DroEre_CAF1 3146 117 + 1
---CUAAAUGUUCACCAUGGAGAACAGCGACGAGAUACUACAGAUCCUGGAGCGAUUCACGGAUCUUAAGCAAAAGGAGAUCCCAAAGGAGCUGGAGGACUAUCUGCAGUAUGUGGCCAA
---.....(((((.(....).)))))((.((...(((((.((((((((..(((.......(((((((.........))))))).......)))..))))...)))).))))))).))... ( -33.84)
>consensus
___CUAAAUGGUCACCAUGGAAAACAGCGACGAGAUAAUGCAGAUCCUGGAGCGCUUCACGGAUCUUAAGCAAAAGGAGAUCCCAAAGGAGCUGGAGGAAUACCUACAGUAUGUGGCCAA
........(((((((..((.....((((..........(((((((((((((....)))).))))))...)))...((.....))......)))).(((....))).))....))))))). (-23.52 = -24.04 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:46 2006