Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,318,838 – 10,318,933 |
Length | 95 |
Max. P | 0.634132 |
Location | 10,318,838 – 10,318,933 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 61.86 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -13.47 |
Energy contribution | -11.85 |
Covariance contribution | -1.63 |
Combinations/Pair | 1.42 |
Mean z-score | -1.47 |
Structure conservation index | 0.47 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10318838 95 + 22224390 GAGCGCGGCGUUGCCACCUGGUCCGUUGGGAUCCAGCCAGACCGCCGAGUGAAACUAAUUCCGGGGGUGGCAGUC--------------GCCUGGCA-AUUAUUAAACAA ..((..(((((((((((((((((.(((((...)))))..)))).((((((.......))).)))))))))))).)--------------)))..)).-............ ( -40.00) >DroPse_CAF1 60022 94 + 1 -----CAGCGUUGCCACACCGCCUCAGAAAAUCGAACCAGAUUGACAGCCCCAUAUA-----AUGUGUGGCGUGCA------ACUCUACACCUGGCAAAUUAAUAAAUUA -----.((.(((((.((.........(..((((......))))..).(((.(((...-----..))).))))))))------)).))....................... ( -17.60) >DroYak_CAF1 47395 103 + 1 GAUUGCGGCGUUGCCACCUGGUCCGGUGGAAUCCAGCCAGACCGCCAAGUAAAACUAGAG-CAGGGGUGGCAGUC-CCGGCAAA----CACCUGGCA-AUUGUUAAACAA ((((((((..(((((((((((((.(((((...))).)).))))(((.((.....)).).)-)..)))))))))..-))((....----..))..)))-)))......... ( -39.30) >DroPer_CAF1 61745 94 + 1 -----CAGCGUUGCCACACCGCCUCAGAAAAUCGAACCAGAUUGACAGCCCCAUAUA-----AUGUGUGGCGUGCA------ACUCUACACCUGGCAAAUUAAUAAAUUA -----.((.(((((.((.........(..((((......))))..).(((.(((...-----..))).))))))))------)).))....................... ( -17.60) >consensus _____CAGCGUUGCCACACCGCCCCAGAAAAUCCAACCAGACCGACAACCCAAAAUA_____AGGGGUGGCAGGC_______AC____CACCUGGCA_AUUAAUAAACAA .....(((.((((((((((..........((((......))))...........((......)))))))))).................)))))................ (-13.47 = -11.85 + -1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:42 2006