Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,304,719 – 10,304,838 |
Length | 119 |
Max. P | 0.568735 |
Location | 10,304,719 – 10,304,838 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -43.38 |
Consensus MFE | -25.49 |
Energy contribution | -26.52 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.34 |
Mean z-score | -1.74 |
Structure conservation index | 0.59 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568735 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10304719 119 - 22224390 AAUUCUCGUUUAUCGCUGCAUGGGCAUCGAUUUGUGGAGCCCCACGAUGGCGAAUGACCGCCCGUGGCUGACCUUUGUCACAAUGGGACCACUUUUCCUGUUUAUGGUGCCCAUGUUCC .................((((((((((((..((((((....)))))).((((......)))).(((((........)))))(((((((.......)))))))..))))))))))))... ( -42.40) >DroPse_CAF1 41786 119 - 1 GAUACUCGUCUACCGCCUGAUGGGCAUCGACCUGUGGAGCCCCACGGCGGUCAACGAUCGUCACUUGGUCACGUUCGUGACCAUGGGCCCACUGUUCGCCUUCAUGCUGCCCAUGUUCC (((..((((..((((((((..((((.((.(....).)))))))).))))))..))))..)))....((((((....))))))((((((.((.((........))))..))))))..... ( -47.00) >DroEre_CAF1 35180 119 - 1 AAUCCUUGUUUAUCGCUGCAUGGGCAUCGAUUUGUGGAGUCCCACGAUGGAGAACGACCGUCCGUGGCUGACGUUUGUCACAAUGGGACCACUUUUCCUGUUCAUGGUGCCCAUGUUCC .................((((((((((((......(((((((((.(((((.......))))).(((((........)))))..))))))......)))......))))))))))))... ( -42.60) >DroYak_CAF1 33150 119 - 1 AAUCCUCGUUUAUCGCUGCAUGGGCAUCGAUUUGUGGAGUCCCACGAUGGCGAACGACCGUCCGUGGCUGACGUUCGUCACAAUGGGACCGCUUUUCCUGUUCAUGGUGCCCAUGUUCC .................((((((((((((......(((((((((...(((((((((.(.((.....)).).)))))))))...))))))......)))......))))))))))))... ( -45.80) >DroAna_CAF1 42701 119 - 1 GAUCCUGGUUUACCGUUGCAUGGGUAUCGACCUCUGGAGUCCAACCAGCGCCAACGACCGACGGCUUCUGACGGUGGUGACGAUGGGACCCCUGUUCGUGUUCAUGUUGCCCAUGUUCC ......((....))(..(((((((((.(((.(...((.((((......((((....((((.(((...))).))))))))......)))).)).).))).........)))))))))..) ( -35.50) >DroPer_CAF1 42747 119 - 1 GAUACUCGUCUACCGCCUGAUGGGCAUCGACCUGUGGAGCCCCACGGCGGUCAACGAUCGUCACUUGGUCACGUUCGUGACCAUGGGCCCACUGUUCGCCUUCAUGCUGCCCAUGUUCC (((..((((..((((((((..((((.((.(....).)))))))).))))))..))))..)))....((((((....))))))((((((.((.((........))))..))))))..... ( -47.00) >consensus AAUCCUCGUUUACCGCUGCAUGGGCAUCGACCUGUGGAGCCCCACGAUGGCCAACGACCGUCCGUGGCUGACGUUCGUCACAAUGGGACCACUGUUCCUGUUCAUGGUGCCCAUGUUCC .................(((((((((..((...((((...((((....((((((((.(.((.....)).).))))))))....)))).))))...))((......)))))))))))... (-25.49 = -26.52 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:36 2006