Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,298,470 – 10,298,560 |
Length | 90 |
Max. P | 0.537567 |
Location | 10,298,470 – 10,298,560 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 79.93 |
Mean single sequence MFE | -9.00 |
Consensus MFE | -8.55 |
Energy contribution | -7.67 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.16 |
Mean z-score | 1.05 |
Structure conservation index | 0.95 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10298470 90 + 22224390 AUAUACAUAC--AUAUAUAUAGUGAAGCACCGGACAAUUCAAGUAAUUAAAAAAGGAGUAAGAACAUCGCCACUUUGUGGAUUUGGUUAUUU ..........--............................(((((((((((....((((....)).)).((((...)))).))))))))))) ( -8.30) >DroSec_CAF1 38905 92 + 1 UUAUACAUACGUAUAUAUAUAGUGAAGCACCGGACAAUUGAAGUAAUUAAAAAAGGAGUAAGAACAUCGCCACUUUGUGGAUUUGGUUAUUU .(((((....))))).........................(((((((((((....((((....)).)).((((...)))).))))))))))) ( -10.50) >DroEre_CAF1 25420 80 + 1 ------------ACAUAUAUAGUGAAAGGCCAGAAAAAACAAGUAAUUAAAAAUAAAGUAAGAACAUUGCCACGUUGUGGAUUUAGUUAUUU ------------............................(((((((((((......((....))....((((...)))).))))))))))) ( -8.20) >consensus _UAUACAUAC__AUAUAUAUAGUGAAGCACCGGACAAUUCAAGUAAUUAAAAAAGGAGUAAGAACAUCGCCACUUUGUGGAUUUGGUUAUUU ........................................(((((((((((...((.((....)).)).((((...)))).))))))))))) ( -8.55 = -7.67 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:35 2006