Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,294,498 – 10,294,596 |
Length | 98 |
Max. P | 0.712605 |
Location | 10,294,498 – 10,294,596 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -23.16 |
Consensus MFE | -13.81 |
Energy contribution | -13.75 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.60 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712605 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10294498 98 + 22224390 UCCUUCCAUUUUUGGCAUUGAGCCGGCUUAAGUAUGCCAUACCUGCUUGAUUUUCAUUUUCAUUUUGAU------------------UUUGAUGCCGGCA----CAUUCCAUUUUGGUGC .....(((....(((...((.(((((((((((((.(.....).)))))))...(((...((.....)).------------------..))).)))))).----))..)))...)))... ( -25.40) >DroSec_CAF1 34979 101 + 1 UCCUUCCAUUUUCGG-AUUGAGCCGGCUUAAGUAUGCCAUACCUGCUUGAUUUUCAUUUUCAUUUUGAU------------------UUUGAUGCCGGCAUUUCCAUUCCAUUUUGGUGC ((..(((......))-)..))(((((((((((((.(.....).)))))))...(((...((.....)).------------------..))).))))))....(((........)))... ( -24.20) >DroEre_CAF1 21677 109 + 1 UCCUUCCAUUUUCGC-AUUGAGCCGGCUUAAGUGUGCCAUACCUGCUUGAUUCUCAUUUUGAUUUUCAUUUUGAUUUU------GAUUUUGAUGCCAGCA----CAUUCCAUUUUGCUGC .............((-((..((..(((........)))...............(((...((.....))...)))....------...))..))))(((((----.(......).))))). ( -17.60) >DroYak_CAF1 22548 115 + 1 UCCUUCCAUUUUCGC-AUUGAGCCGGCUUAAGUAUGGCAUACCUGCUUGAUUUUGAUUUUCAUUUUGAUUUUGAUUUUCAUUUGGGUUCCGAUGCCAGCA----CAUUCCAUUUUGGUGC .............((-((..((..((........((((((....(((..(...(((...(((.........)))...))).)..)))....))))))...----....))..))..)))) ( -25.46) >consensus UCCUUCCAUUUUCGC_AUUGAGCCGGCUUAAGUAUGCCAUACCUGCUUGAUUUUCAUUUUCAUUUUGAU__________________UUUGAUGCCAGCA____CAUUCCAUUUUGGUGC .....................(((((((((((((.(.....).))))))).........((.....)).........................))))))..................... (-13.81 = -13.75 + -0.06)
Location | 10,294,498 – 10,294,596 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -20.98 |
Consensus MFE | -13.77 |
Energy contribution | -13.40 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.15 |
Mean z-score | -1.69 |
Structure conservation index | 0.66 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10294498 98 - 22224390 GCACCAAAAUGGAAUG----UGCCGGCAUCAAA------------------AUCAAAAUGAAAAUGAAAAUCAAGCAGGUAUGGCAUACUUAAGCCGGCUCAAUGCCAAAAAUGGAAGGA ...(((...(((..((----.((((((.(((..------------------.((.....))...))).........((((((...))))))..)))))).))...)))....)))..... ( -23.80) >DroSec_CAF1 34979 101 - 1 GCACCAAAAUGGAAUGGAAAUGCCGGCAUCAAA------------------AUCAAAAUGAAAAUGAAAAUCAAGCAGGUAUGGCAUACUUAAGCCGGCUCAAU-CCGAAAAUGGAAGGA ...(((...((((.(((....((((((.(((..------------------.((.....))...))).........((((((...))))))..))))))))).)-)))....)))..... ( -22.80) >DroEre_CAF1 21677 109 - 1 GCAGCAAAAUGGAAUG----UGCUGGCAUCAAAAUC------AAAAUCAAAAUGAAAAUCAAAAUGAGAAUCAAGCAGGUAUGGCACACUUAAGCCGGCUCAAU-GCGAAAAUGGAAGGA ((((((........))----)((((((.........------..........(((...((.....))...))).((.......))........))))))....)-))............. ( -17.30) >DroYak_CAF1 22548 115 - 1 GCACCAAAAUGGAAUG----UGCUGGCAUCGGAACCCAAAUGAAAAUCAAAAUCAAAAUGAAAAUCAAAAUCAAGCAGGUAUGCCAUACUUAAGCCGGCUCAAU-GCGAAAAUGGAAGGA (((((.....))..((----.((((((.............(((...(((.........)))...))).......(((....))).........)))))).)).)-))............. ( -20.00) >consensus GCACCAAAAUGGAAUG____UGCCGGCAUCAAA__________________AUCAAAAUGAAAAUGAAAAUCAAGCAGGUAUGGCAUACUUAAGCCGGCUCAAU_CCGAAAAUGGAAGGA .....................((((((.........................((.....))...............(((((.....)))))..))))))..................... (-13.77 = -13.40 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:33 2006