Locus 3861

Sequence ID X_DroMel_CAF1
Location 10,292,402 – 10,292,498
Length 96
Max. P 0.653752
window6352

overview

Window 2

Location 10,292,402 – 10,292,498
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 76.18
Mean single sequence MFE -23.16
Consensus MFE -10.94
Energy contribution -13.10
Covariance contribution 2.16
Combinations/Pair 1.17
Mean z-score -1.86
Structure conservation index 0.47
SVM decision value 0.25
SVM RNA-class probability 0.653752
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10292402 96 + 22224390
GAAUGGGGUUGUGCGCUUCAGCUCUUGUGCGUCGGCAUAUAAAAAUCGAUGGUGUGGCGACCAAAAUAAAGGCCGAAAAACAGCAGCAAAACAAAA
...((..(((((....(((.((..((((..((((.(((((...........))))).))))....))))..)).)))..)))))..))........ ( -23.60)
>DroSec_CAF1 33088 96 + 1
GAAUGGGGUUGUGUGCUUCAGCUCUUGUUCGUCGGAAUAUAAAAAUCGAUGGUGUGGCGACCAAAAUAAAGGCCGAAAAGCAGCAGCAAAACAAAA
...((..(((((.((((((.((..(((((.((((..((((...........))))..))))...)))))..)).))..)))))))))....))... ( -21.30)
>DroEre_CAF1 19778 94 + 1
GAAUGGGGUUGAGUGUUUCAGCUCUUGUGCGUCGGCAUACAAAAAUCGAUGGUAUGGCGACCAAAAUAAAGGCCGAAACACAGCAAAAAAAAAA--
............(((((((.((..((((..((((.(((((...........))))).))))....))))..)).))))))).............-- ( -27.70)
>DroWil_CAF1 33742 73 + 1
---UUGCCGUGUGUGUUUG----CGUGUGUGUGGACACACAAAAAUCGAUGAUGCAAAGACCAAAAUAAAAGCCAA----CAG------A------
---((((..((((((((..----((....))..))))))))...(((...)))))))...................----...------.------ ( -16.00)
>DroYak_CAF1 20486 93 + 1
ACGUGGGGUUGUGUGUUUCAGCUCUUGUGCGUCGGCAUACAAAAAUCGAUGUUGUGGCGACCAAAAUAAAGGCCGAAAAACAGCAACAAAAAA---
...((..(((((...((((.((..((((..((((.((((((........)).)))).))))....))))..)).)))).)))))..)).....--- ( -27.20)
>consensus
GAAUGGGGUUGUGUGUUUCAGCUCUUGUGCGUCGGCAUACAAAAAUCGAUGGUGUGGCGACCAAAAUAAAGGCCGAAAAACAGCAACAAAAAAA__
.......(((((....(((.((..((((..((((.((((((........)).)))).))))....))))..)).)))..)))))............ (-10.94 = -13.10 +   2.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:31 2006