Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,291,166 – 10,291,261 |
Length | 95 |
Max. P | 0.553953 |
Location | 10,291,166 – 10,291,261 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -18.88 |
Energy contribution | -17.88 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.29 |
Mean z-score | -1.93 |
Structure conservation index | 0.58 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10291166 95 - 22224390 AAUUUGUUUGUGCAGUCG-----------CCGCCAAAGG-GGG-AACUCGUGGAAAAAAGCUGCAAAAUUGCAGGUGGU-UCGCAGAUCUGCCUUGGCAAGGUAACUAG .............(((..-----------(((((((.((-.((-(.((.(((((....(.(((((....))))).)..)-)))))).))).)))))))..))..))).. ( -32.80) >DroSec_CAF1 31822 96 - 1 AAUUUGUUUCUGCAGUCG-----------CCGCCGAAGGGGGG-AACUCGUGGAAAAAAGCUGCAAAAUUGCAGGUGGU-UCGCAGAUCUGCCUCGGCAUGGUAACUAG .............(((..-----------(((((((..((.((-(.((.(((((....(.(((((....))))).)..)-)))))).))).)))))))..))..))).. ( -33.00) >DroEre_CAF1 18544 93 - 1 AAUUUCUUUGUGCAGUUG-----------CCGCCGAGGG-GGG-AAAUCGUGGGAA-AAACUGCAAAAUUGCAGGCGC--UUGCAGAGCUGCUUUGGCAAGAUAACUGG ............((((((-----------(.(((((((.-((.-...(((..((..-...(((((....)))))...)--)..).)).)).)))))))..).)))))). ( -28.80) >DroYak_CAF1 19322 108 - 1 AAUUUCUUUGUGCAAUCGCCUCGCCACCGCCGCCGAAGG-GGGCAACUUGUGGAAAAAAACUGCAAAAUUGCAGGUGGUUUUGCACAACUGCCUUGGCACGAUAACUAG .......((((((((..(((.(.((((.(((.((....)-)))).....)))).......(((((....)))))).))).)))))))).(((....))).......... ( -35.90) >consensus AAUUUCUUUGUGCAGUCG___________CCGCCGAAGG_GGG_AACUCGUGGAAAAAAACUGCAAAAUUGCAGGUGGU_UCGCAGAUCUGCCUUGGCAAGAUAACUAG ...............................(((((.((.((..................(((((....)))))(((....)))....)).)))))))........... (-18.88 = -17.88 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:30 2006