Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,264,014 – 10,264,131 |
Length | 117 |
Max. P | 0.505186 |
Location | 10,264,014 – 10,264,131 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.86 |
Mean single sequence MFE | -40.38 |
Consensus MFE | -28.96 |
Energy contribution | -28.28 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.19 |
Mean z-score | -1.39 |
Structure conservation index | 0.72 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505186 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10264014 117 + 22224390 UACAGUCUGCCUUUUACGGUAGGCGUCGGCGUGUUUGUAGGCGUGGCAUGGUGGCAGGCUGGCAGGCGUGAACACAUGGAGGCUCUAUGAAUGCCAAAGGAGCCAGAAGAAAGGUGU-- ....(((((((......)))))))...(((((((((((.(((.((.(.....).)).))).)))))).......(((((.....))))).)))))......(((........)))..-- ( -39.90) >DroSec_CAF1 29650 117 + 1 UACAGUCUGCCUUUUACGGUAGGCGUCGUCGUGUUUGUAGGCGUGGCAUGGUGGCGGGCUGGCAGGCGUGAACACAUGGAGGCUCUAUGAAUGCCAAAGGAACCAGAAGAAAGGUGU-- ..((((((((((........))))(((..((((((((....)).))))))..)))))))))...(((((.....(((((.....))))).)))))......(((........)))..-- ( -37.20) >DroEre_CAF1 36846 117 + 1 UACAGUCUACCUUUUACGGAAGGCGUUGGCGUGUUUGUAGGCGUGGCAGGCUGGCAGGCUGGCAGGCGUGAACACAAGGAGGCUCUAUGAAUGCCGAAGGAGCCAGAAGAAAGGUGU-- .......((((((((.(....)...((((((((((..(..((.((.(((.(.....).))).)).)))..))))).....(((.........)))......)))))..)))))))).-- ( -40.20) >DroYak_CAF1 30000 111 + 1 UACAGUACGCCUUUUGCGGGAGACAUGGUCGUGUUUGUGGGCGUGGCAGGC--------UGGCAGGCGUAAACACAUGGAGGCUCCUUGAAUGCCAAAGGAGCCAGAAGAAAGGUGUGU .....((((((((((........((((.(..(((((((.(((.......))--------).)))))))..)...))))..((((((((........))))))))....)))))))))). ( -44.20) >consensus UACAGUCUGCCUUUUACGGUAGGCGUCGGCGUGUUUGUAGGCGUGGCAGGCUGGCAGGCUGGCAGGCGUGAACACAUGGAGGCUCUAUGAAUGCCAAAGGAGCCAGAAGAAAGGUGU__ .......((((((((...............((((((..(.((.((.((...........)).)).)).))))))).....((((((............))))))....))))))))... (-28.96 = -28.28 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:24 2006