Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,257,761 – 10,257,860 |
Length | 99 |
Max. P | 0.999990 |
Location | 10,257,761 – 10,257,860 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 72.64 |
Mean single sequence MFE | -22.05 |
Consensus MFE | -13.30 |
Energy contribution | -14.08 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.18 |
Mean z-score | -3.78 |
Structure conservation index | 0.60 |
SVM decision value | 5.58 |
SVM RNA-class probability | 0.999990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10257761 99 + 22224390 A--------UUGCUAGAGCACAAAACUGUUUAACAGUCUUAAAU-----AAGAACAGGAAACUGCUCUAGA-AAUGUAACCAAAAUAUAAAUAACUAUAUAUCGGUUGAUCGG .--------...((((((((.....((((((.............-----..)))))).....)))))))).-....(((((...(((((......)))))...)))))..... ( -21.96) >DroSec_CAF1 24543 97 + 1 A--------UUUCUAGAGCACAAAACUGUUUAACAGUCUUAAAAAAG--AAGAACAGGAAACUGCUCUAGAAAAUGUAACCAAAAUAUAAAUAA------AAUAGUUGAUCGG .--------(((((((((((.....((((((.....((((....)))--).)))))).....))))))))))).....................------............. ( -22.80) >DroYak_CAF1 25213 109 + 1 AUUUGCGUAUUGCUAAAGCGCAAAACAGUUUAACAUUCUCAAAUAAAAAAAGAACAGGAAACUGCUUGAACAAAUU-GAUCAAAACAUAAACAAUUAUAU---AUUUGAUCGA .(((((((.........)))))))...((((((..((((...........))))(((....))).))))))...((-(((((((..((((....))))..---.))))))))) ( -21.40) >consensus A________UUGCUAGAGCACAAAACUGUUUAACAGUCUUAAAUAA___AAGAACAGGAAACUGCUCUAGAAAAUGUAACCAAAAUAUAAAUAA_UAUAUA__AGUUGAUCGG .........(((((((((((.....((((((....................)))))).....)))))))))))........................................ (-13.30 = -14.08 + 0.78)
Location | 10,257,761 – 10,257,860 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 72.64 |
Mean single sequence MFE | -24.70 |
Consensus MFE | -14.89 |
Energy contribution | -15.02 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.23 |
Mean z-score | -3.70 |
Structure conservation index | 0.60 |
SVM decision value | 5.55 |
SVM RNA-class probability | 0.999989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10257761 99 - 22224390 CCGAUCAACCGAUAUAUAGUUAUUUAUAUUUUGGUUACAUU-UCUAGAGCAGUUUCCUGUUCUU-----AUUUAAGACUGUUAAACAGUUUUGUGCUCUAGCAA--------U ......((((((.((((((....)))))).))))))..(((-.((((((((.............-----...((((((((.....)))))))))))))))).))--------) ( -25.29) >DroSec_CAF1 24543 97 - 1 CCGAUCAACUAUU------UUAUUUAUAUUUUGGUUACAUUUUCUAGAGCAGUUUCCUGUUCUU--CUUUUUUAAGACUGUUAAACAGUUUUGUGCUCUAGAAA--------U ..((((((.(((.------......)))..))))))....(((((((((((.............--......((((((((.....)))))))))))))))))))--------. ( -21.20) >DroYak_CAF1 25213 109 - 1 UCGAUCAAAU---AUAUAAUUGUUUAUGUUUUGAUC-AAUUUGUUCAAGCAGUUUCCUGUUCUUUUUUUAUUUGAGAAUGUUAAACUGUUUUGCGCUUUAGCAAUACGCAAAU ..(((((((.---((((((....)))))))))))))-.((((((..(((((((((..(((((((.........)))))))..)))))))))(((......)))....)))))) ( -27.60) >consensus CCGAUCAACU__UAUAUA_UUAUUUAUAUUUUGGUUACAUUUUCUAGAGCAGUUUCCUGUUCUU___UUAUUUAAGACUGUUAAACAGUUUUGUGCUCUAGCAA________U ..((((((......................))))))....((((((((((((....))..............((((((((.....)))))))).))))))))))......... (-14.89 = -15.02 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:21 2006