Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,234,009 – 10,234,102 |
Length | 93 |
Max. P | 0.616967 |
Location | 10,234,009 – 10,234,102 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 69.66 |
Mean single sequence MFE | -15.14 |
Consensus MFE | -10.22 |
Energy contribution | -10.00 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.09 |
Mean z-score | -0.92 |
Structure conservation index | 0.68 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10234009 93 + 22224390 CAAGAAAUCCAGAUUGAAACUGCGCGAUUUUUUCGUCGCCGAGUUUGGUAUUACCACUUUCAAUCU------AAG--------AACAACCUCCCC------------UAUUGAUCACUU ..........((((((((((.((((((.....))).))).)....(((.....))).)))))))))------...--------............------------............ ( -17.60) >DroPse_CAF1 22611 74 + 1 CAAGAAAUCUAGAUUGAAAUUGCGCGACUUUUUCGUCGCCGAAUUUGGUAUUACCU---------------------------GAAACCCC------------------UUGAUUACAC ((((...((...((..((.(((.(((((......)))))))).))..)).......---------------------------)).....)------------------)))....... ( -13.30) >DroEre_CAF1 2424 90 + 1 CAAGAAAUCCAGAUUGAAACUGCGCGAUUUUUUCGUCGCCGAGUUUGGUAUUACCACUUUCAAUCU-----------------AAAAAUCCUCCC------------UAUUGAUCACUU ..........((((((((((.((((((.....))).))).)....(((.....))).)))))))))-----------------............------------............ ( -17.60) >DroYak_CAF1 2379 99 + 1 CAAGAAAUCCAGAUUGAAACUGCGCGAUUUUUUCGUCGCCGAGUUUGGUAUUACCACUUUCAAUCCUCCACUUAA--------AAAAUUCCUCCC------------UAUUGAUCACUU ...........(((..(....((((((.....))).))).(((..(((.....)))..)))..............--------............------------..)..))).... ( -16.10) >DroAna_CAF1 3115 105 + 1 CAAGAAAUCGAGAUUGAAAUUGCGCGAUUUUUUCGUCGCCGAAUUUGGUAUUA--------AAUCU------AAGCUUUAAAAAAAAAUACUACAAAAAAUAUUAGAAAUUCAUCUGCU ..........((((.(((.(((.(((((......))))))))...(((((((.--------.....------..............)))))))................)))))))... ( -12.95) >DroPer_CAF1 2262 74 + 1 CAAGAAAUCUAGAUUGAAAUUGCGCGACUUUUUCGUCGCCGAAUUUGGUAUUACCU---------------------------GAAACCCC------------------UUGAUUACAC ((((...((...((..((.(((.(((((......)))))))).))..)).......---------------------------)).....)------------------)))....... ( -13.30) >consensus CAAGAAAUCCAGAUUGAAACUGCGCGAUUUUUUCGUCGCCGAAUUUGGUAUUACCA_____AAUCU_________________AAAAACCCUCCC____________UAUUGAUCACUU ............((..((..((.(((((......)))))))..))..))...................................................................... (-10.22 = -10.00 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:20 2006