Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,233,666 – 10,233,760 |
Length | 94 |
Max. P | 0.728345 |
Location | 10,233,666 – 10,233,760 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 71.84 |
Mean single sequence MFE | -36.73 |
Consensus MFE | -18.55 |
Energy contribution | -19.00 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.21 |
Mean z-score | -1.67 |
Structure conservation index | 0.51 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10233666 94 + 22224390 UUAAAAAACAAAAAGAGGCCGAAGAGCACGCCCAGAAGCUGCUAAUCGCUCAACAAUUGGCCGCCGCCGGCGG---AG-CAU-----CCGGCGCAU---CUGCCAC------------ ..............(((..(((..((((.((......))))))..)))))).......(((....)))(((((---((-(..-----.....)).)---)))))..------------ ( -27.20) >DroVir_CAF1 2525 115 + 1 UCAAAAAACAAAAAGAGGCCGAGGAGCAUGCACAGAAGCUGAUCAUUGCUCAACAAUUGGCCGCUUCUGGCGGCAGCGGCAGCGACGGCGGCGUCU---CUGCCUCGAGCUCAGCUGC ........((..(((.((((((.(((((((..(((...)))..)).))))).....)))))).))).))(((((((((((((.((((....)))).---)))))....)))..))))) ( -42.00) >DroGri_CAF1 2943 97 + 1 UCAAAAAACAAAAAGAGGCCGAGGAGCAUGCCCAGAAGCUGCUCAUCUCUCAACAAUUGGCUGCCGCCGGUGU---CGG---------------UG---CCGCCUCCACUUCAGCUGC ..............(((((.((((((((.((......)))))))..))).........(((.(((((....).---)))---------------))---)))))))............ ( -28.20) >DroYak_CAF1 2012 94 + 1 UUAAAAAACAAAAAGAGGCCGAAGAGCACGCCCAGAAGCUGCUAAUCGCUCAACAAUUGGCCGCCGCCGGCGG---AG-CAA-----CCGGCUUAU---CCGCCUC------------ ..............(((((.((.((((..(((..(..((.((((((.(.....).)))))).))..).)))((---..-...-----)).)))).)---).)))))------------ ( -28.10) >DroMoj_CAF1 2555 112 + 1 UCAAAAAACAAAAAGAGGCCGAGGAGCAUGCACAGAAGCUGCUCAUCGCUCAGCAAUUGGCCGCUGCUGGCGG---CGGCAGUGGCAGCGGCGUCU---CUGCCUCCAGUUCGGCCGC ................((((((((((...(((.(((.((((((....((...)).....((((((((((....---)))))))))))))))).)))---.)))))))...)))))).. ( -51.40) >DroAna_CAF1 2741 102 + 1 UCAAAAAGCAAAAAGAGGCGGAAGAGCACGCCCAGAAGCUGCUCAUUGCCCAGCAGUUGGCGGCUGCCGGCGG---UG-CAG-----CUGCCGCAGUGGCUGCCGCAUCCG------- .......((.....(.((((........)))))...(((((((........)))))))((((((..(((((((---..-...-----))))))..)..)))))))).....------- ( -43.50) >consensus UCAAAAAACAAAAAGAGGCCGAAGAGCACGCCCAGAAGCUGCUCAUCGCUCAACAAUUGGCCGCCGCCGGCGG___CG_CAG_____CCGGCGUAU___CUGCCUC_A__U_______ ..............(((((.((.(((((.((......))))))).)).............(((((...)))))............................)))))............ (-18.55 = -19.00 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:17 2006