Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,231,203 – 10,231,351 |
Length | 148 |
Max. P | 0.994527 |
Location | 10,231,203 – 10,231,294 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 97.36 |
Mean single sequence MFE | -24.31 |
Consensus MFE | -24.30 |
Energy contribution | -24.14 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.06 |
Mean z-score | -1.38 |
Structure conservation index | 1.00 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938538 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10231203 91 - 22224390 CUCUGCAGGGGGAGAGGAGCUGAGAAAUCGGCUUAACUGAGAAUUUAUAAACCAGCGUAAUCUUUUCUCCGCCAAUAACAAAACUCGUCGG .......((.(((((((((((((....)))))))....((((..((((........)))))))))))))).)).................. ( -24.50) >DroSec_CAF1 27833 91 - 1 CUCUGCAGGGGGAGAGAAGCUGAGAAAUCGGCUUAACUGAGAAUUUAUAAACCAGCGUAAUCUUUUCUCCGCCAAUAACAAAACUCGUCGG .......((.(((((((((((((....)))))))....((((..((((........)))))))))))))).)).................. ( -24.10) >DroSim_CAF1 28274 91 - 1 CUCUGCAGGGGGAGAGGAGCUGAGAAAUCGGCUUAACUGAGAAUUUAUAAACCAGCGUAAUCUUUUCUCCGCCAAUAACAAAACUCGUCGG .......((.(((((((((((((....)))))))....((((..((((........)))))))))))))).)).................. ( -24.50) >DroEre_CAF1 28480 90 - 1 CUCUGAAGGGGGAGAGGAGCUGAGAAAUCGGCUUAACUGAGAACUUAUAGACCAGCGUAAU-UUUUCUCCGCCAAUAACAAAACUCGUCGG .......((.(((((((((((((....)))))))..(((.............)))......-..)))))).)).................. ( -24.22) >DroYak_CAF1 29238 90 - 1 CUCUGAAGGGGGAGAGGAGCUGAGAAAUCGGCUUAACUGAGAAUUUAUAAACCAGCGUAAU-UUUUCUCCGCCAAUAACAAAACUCGUCGG .......((.(((((((((((((....)))))))..(((.............)))......-..)))))).)).................. ( -24.22) >consensus CUCUGCAGGGGGAGAGGAGCUGAGAAAUCGGCUUAACUGAGAAUUUAUAAACCAGCGUAAUCUUUUCUCCGCCAAUAACAAAACUCGUCGG .......((.(((((((((((((....)))))))..(((.............))).........)))))).)).................. (-24.30 = -24.14 + -0.16)
Location | 10,231,259 – 10,231,351 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 80.47 |
Mean single sequence MFE | -20.30 |
Consensus MFE | -16.57 |
Energy contribution | -16.35 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.74 |
Structure conservation index | 0.82 |
SVM decision value | 2.49 |
SVM RNA-class probability | 0.994527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10231259 92 - 22224390 AUCGCAAAUCGAUCAAGGAAUAUAUAAAAUAUAUAUAUCUAUAUAGAUGUGUUAGAUCUCUGCAGGGGGAGAGGAGCUGAGAAAUCGGCUUA ...(((....((((....(((((((....((((((....)))))).))))))).))))..)))..........(((((((....))))))). ( -22.70) >DroEre_CAF1 28535 72 - 1 AUCGCAAAUCGGUCAAGGAAUAUA-------------------AAGAUGUGC-UGAUCUCUGAAGGGGGAGAGGAGCUGAGAAAUCGGCUUA ...(((.(((..............-------------------..))).)))-...(((((......))))).(((((((....))))))). ( -19.29) >DroYak_CAF1 29293 72 - 1 AUCGCAAAUCGGUCAAGGAAUAUA-------------------UAGAUGUGU-AGAUCUCUGAAGGGGGAGAGGAGCUGAGAAAUCGGCUUA .((.(...((..(((..((.((((-------------------(....))))-)..))..)))..)).).)).(((((((....))))))). ( -18.90) >consensus AUCGCAAAUCGGUCAAGGAAUAUA___________________UAGAUGUGU_AGAUCUCUGAAGGGGGAGAGGAGCUGAGAAAUCGGCUUA ...(((.(((...................................))).)))....(((((......))))).(((((((....))))))). (-16.57 = -16.35 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:16 2006