Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,138,080 – 1,138,200 |
Length | 120 |
Max. P | 0.596813 |
Location | 1,138,080 – 1,138,200 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.75 |
Mean single sequence MFE | -40.85 |
Consensus MFE | -40.12 |
Energy contribution | -40.12 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.98 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1138080 120 + 22224390 CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUACGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGAGCGCAAGUCCUGGGC ...........(((((.((.(((((((....((((((........))))))...))))))).)).)))))((((.....((.(((.(((((....))))).))).)).....)))).... ( -40.30) >DroSec_CAF1 34710 120 + 1 CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUACGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGAGCGCAAAUCCUGGGC ...........(((((.((.(((((((....((((((........))))))...))))))).)).)))))((((.....((.(((.(((((....))))).))).)).....)))).... ( -39.20) >DroEre_CAF1 35811 120 + 1 CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUUCGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGGGCGCAAGUCCUGGGC ....................(((((((((((((.((......))))))))....)))))))((((((.(........)..))))))(((((....)))))(((((((....))))))).. ( -43.60) >DroYak_CAF1 35784 120 + 1 CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUACGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGAGCGCAAGUCCUGGGC ...........(((((.((.(((((((....((((((........))))))...))))))).)).)))))((((.....((.(((.(((((....))))).))).)).....)))).... ( -40.30) >consensus CUUUCACAUUUUUUUGACGCCCGCUUUUACGAUACGAAAUUACGAUUGUAUAAUAAAGCGGACGGCGGGAAGGAACACAGCGCCGUCGAUGGAGACAUUGCCGGAGCGCAAGUCCUGGGC ...........(((((.((.(((((((((((((.((......))))))))....))))))).)).)))))((((.....((.(((.(((((....))))).))).)).....)))).... (-40.12 = -40.12 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:12 2006