Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,225,665 – 10,225,770 |
Length | 105 |
Max. P | 0.950270 |
Location | 10,225,665 – 10,225,770 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.38 |
Mean single sequence MFE | -55.60 |
Consensus MFE | -31.64 |
Energy contribution | -31.62 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.45 |
Mean z-score | -3.05 |
Structure conservation index | 0.57 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10225665 105 + 22224390 UCCGGCGAAAUGCGUCGGAAGCGCGCCGGAUCGAGACGCCGUUGUGGCGCCUGGCGCAAGUCGAACUUGCGUCGCAGGCACGGCAACAGCGGCUCCGUCCGGAGU (((((((.....)))))))...((.((((((.(((.(((.(((((.(.((((((((((((.....)))))))..))))).).))))).))).))).)))))).)) ( -60.50) >DroPse_CAF1 26790 105 + 1 UCCGGCGAGAUGCGGCGAAAGUGUUGCGGCUCGAGUCGCCGCUGCGGUGCCUGCUGCAGCUCGUAUUUCCUGCGCAGGCACGGCAUCAGCGGCUCUGUGCGCCGC ..(((((((.(((((((....))))))).)))(((((((.(.(((.((((((((.((((..........)))))))))))).))).).))))))).....)))). ( -58.10) >DroEre_CAF1 22820 105 + 1 UCCGGCGAAAUGCGACGAAAGCGCGCCGGAUCGAGACGCCGUUGGGGCGCCUGGCGCAAGUCGAACUUGCGUCGCAGGCACGGCAACAGCGGCUCCGUCCGGAGU ((((((.....(((.(....)))))))(((.((.((.(((((((..((((((((((((((.....)))))))..)))))...))..))))))))))))))))).. ( -55.20) >DroWil_CAF1 15667 105 + 1 UCUGGCGAGAUGCGGCGGAAAUGCGUCGGAUCGAGUCGCCGUUGCGGCGCCUUACGAAUAUCGUUUUUUUUACGUAGGCGCGGCAUUAAUGGCUCUGUGCGCCGC ...((((.(((.(((((......))))).)))((((((....(((.((((((.(((................))))))))).)))....))))))....)))).. ( -44.79) >DroYak_CAF1 23553 105 + 1 UCCGGCGAAAUGCGACGGAAGCGCGCCGGAUCGAGACGCCGUUGUGGCGCCUGGCGCAAGUCGAACUUGCGACGCAGGCACGGCAACAGCGGCUCCGUCCGGAGU ((((((.....(((.(....)))))))((((.(((.(((.(((((.(.((((((((((((.....)))))).).))))).).))))).))).))).))))))).. ( -56.90) >DroPer_CAF1 27693 105 + 1 UCCGGCGAGAUGCGGCGAAAGUGUUGCGGCUCGAGUCGCCGCUGCGGUGCCUGCUGCAGCUCGUAUUUCCUGCGCAGGCACGGCAUCAGCGGCUCUGUGCGCCGC ..(((((((.(((((((....))))))).)))(((((((.(.(((.((((((((.((((..........)))))))))))).))).).))))))).....)))). ( -58.10) >consensus UCCGGCGAAAUGCGGCGAAAGCGCGCCGGAUCGAGACGCCGUUGCGGCGCCUGGCGCAAGUCGAACUUGCGACGCAGGCACGGCAACAGCGGCUCCGUCCGCAGC ((((((.....(((.(....)))))))))).......(((((((..(((((((..(((((.....)))))....)))))...))..)))))))............ (-31.64 = -31.62 + -0.02)
Location | 10,225,665 – 10,225,770 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 80.38 |
Mean single sequence MFE | -50.52 |
Consensus MFE | -26.81 |
Energy contribution | -26.89 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.18 |
Mean z-score | -2.78 |
Structure conservation index | 0.53 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10225665 105 - 22224390 ACUCCGGACGGAGCCGCUGUUGCCGUGCCUGCGACGCAAGUUCGACUUGCGCCAGGCGCCACAACGGCGUCUCGAUCCGGCGCGCUUCCGACGCAUUUCGCCGGA ..(((((.(((((.((((((((..(((((((.(.((((((.....))))))))))))))..)))))))).)))......(((((....)).)))....))))))) ( -54.50) >DroPse_CAF1 26790 105 - 1 GCGGCGCACAGAGCCGCUGAUGCCGUGCCUGCGCAGGAAAUACGAGCUGCAGCAGGCACCGCAGCGGCGACUCGAGCCGCAACACUUUCGCCGCAUCUCGCCGGA (((((.....(((.(((((.(((.((((((((((((..........)))).)))))))).))).))))).)))..)))))..........((((.....).))). ( -52.30) >DroEre_CAF1 22820 105 - 1 ACUCCGGACGGAGCCGCUGUUGCCGUGCCUGCGACGCAAGUUCGACUUGCGCCAGGCGCCCCAACGGCGUCUCGAUCCGGCGCGCUUUCGUCGCAUUUCGCCGGA ..(((((.(((((.((((((((..(((((((.(.((((((.....))))))))))))))..)))))))).)))(((.(((((......))))).))).))))))) ( -55.00) >DroWil_CAF1 15667 105 - 1 GCGGCGCACAGAGCCAUUAAUGCCGCGCCUACGUAAAAAAAACGAUAUUCGUAAGGCGCCGCAACGGCGACUCGAUCCGACGCAUUUCCGCCGCAUCUCGCCAGA ..(((.......))).....(((.(((((((((................))).)))))).)))..(((((...(((.((.((......)).)).))))))))... ( -33.79) >DroYak_CAF1 23553 105 - 1 ACUCCGGACGGAGCCGCUGUUGCCGUGCCUGCGUCGCAAGUUCGACUUGCGCCAGGCGCCACAACGGCGUCUCGAUCCGGCGCGCUUCCGUCGCAUUUCGCCGGA ..(((((.(((((.((((((((..(((((((.(.((((((.....))))))))))))))..)))))))).)))(((.(((((......))))).))).))))))) ( -55.20) >DroPer_CAF1 27693 105 - 1 GCGGCGCACAGAGCCGCUGAUGCCGUGCCUGCGCAGGAAAUACGAGCUGCAGCAGGCACCGCAGCGGCGACUCGAGCCGCAACACUUUCGCCGCAUCUCGCCGGA (((((.....(((.(((((.(((.((((((((((((..........)))).)))))))).))).))))).)))..)))))..........((((.....).))). ( -52.30) >consensus ACGCCGCACAGAGCCGCUGAUGCCGUGCCUGCGAAGCAAAUACGACUUGCGCCAGGCGCCGCAACGGCGACUCGAUCCGGCGCACUUCCGCCGCAUCUCGCCGGA ...(((....(((.(((((.((..(((((((((................)).)))))))..)).))))).)))....)))......((((.((.....)).)))) (-26.81 = -26.89 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:14 2006