Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,224,308 – 10,224,411 |
Length | 103 |
Max. P | 0.739412 |
Location | 10,224,308 – 10,224,411 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 85.92 |
Mean single sequence MFE | -37.20 |
Consensus MFE | -27.70 |
Energy contribution | -28.38 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.23 |
Mean z-score | -1.84 |
Structure conservation index | 0.74 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10224308 103 + 22224390 CUUACUGUUCGACUUCCUUGUAACCUCGGAACUUUGGAGCACCUCUUGUUGUGCUUCAGCCAGUGCAAAAGUGCAAUUACUAACGGGCGGAAGUUGGUAGGAU (((((....((((((((.................((((((((........))))))))(((..((((....))))....(....))))))))))))))))).. ( -32.70) >DroSec_CAF1 20540 103 + 1 CUUACUGAUCGACUUCUUCGUCACCUCGGAACUUUCGAGCAUCUCUUGUUGUGCUUCAGCCAGCGCGAAAGUGCAAUUACUAACGGGAGGAAGUUGGUAGGAU ....((.(((((((((........((((((...))))))...(((((((((.((....))..((((....))))......)))))))))))))))))).)).. ( -34.70) >DroSim_CAF1 20817 103 + 1 CUUACUGAUCGACUUCUUCGACACCUCGGAACUUUGGAGCAUCUCUUGUUGUGCUUCAGCCAGCGCGAAAGUGCAAUUACUAACGGGCGGAAGUUGGUAGGAU ....((.((((((((((((((....)))))....((((((((........))))))))(((.((((....)))).....(....)))).))))))))).)).. ( -36.90) >DroEre_CAF1 21454 103 + 1 CUCGCUGAUCGACUUCCGCGUCACCUCGGAGCUUUGGAGCACCGCCUGUUCUGCGUCAGCUAGCGCGAAAGUGCAGCUACUGACGGGCGGACGUUGGAAGGAU ............((((((((((.....((.(((....))).))(((((((....((.((((.((((....)))))))))).))))))).)))).))))))... ( -44.20) >DroYak_CAF1 22160 103 + 1 CUCACUGCUCGACUUGCGUGUCACCUCAACACUUUGGAGCACCUCUUGUUGGGCUUCGGCCAGCGCGAAAGUGCAAUUGCUGACGGGCGGCAGUUGGAAGGAU ((.((((((......((.(((((.(.(((((....((((...)))))))))(((....))).((((....))))....).))))).)))))))).))...... ( -37.50) >consensus CUUACUGAUCGACUUCCUCGUCACCUCGGAACUUUGGAGCACCUCUUGUUGUGCUUCAGCCAGCGCGAAAGUGCAAUUACUAACGGGCGGAAGUUGGUAGGAU ....((..(((((((((((..............(((((((((........)))))))))...((((....))))............)))))))))))..)).. (-27.70 = -28.38 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:12 2006