Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,224,061 – 10,224,157 |
Length | 96 |
Max. P | 0.763632 |
Location | 10,224,061 – 10,224,157 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -20.54 |
Energy contribution | -20.10 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.95 |
Structure conservation index | 0.91 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10224061 96 - 22224390 CAUCGAACAGAACGAAAGAUCAAGGUGAAGCAGCUUCAGGCACUGAAGCUUCAUCGGAACAGUCCAAGGCUCAAGCCGAAUCCCAUUCGAAAACCA ..(((((..((.(....).))..(((((...((((((((...)))))))))))))(((....)))..(((....)))........)))))...... ( -28.00) >DroSec_CAF1 20293 96 - 1 CAUUAAACAGAACGAAAGAUCAAGAUGCAGCAGCUUCAGGCACUGGAGCAUCAUCGGAACAGUCCAAGGCCCAAGCCAAAUACCAUUCGAAACCCA ............((((.......((((.(...(((((((...))))))).)))))(((....)))..(((....)))........))))....... ( -19.90) >DroSim_CAF1 20570 96 - 1 CAUUAAACAGAACGAAAGAUCAAGAUGCAGCAGCUUCAGGCACUGGAGCAUCAUCGGAACAGUCCAAGGCCCAAGCCAAAUCCCAUUCGAAACCCA ............((((.......((((.(...(((((((...))))))).)))))(((....)))..(((....)))........))))....... ( -19.90) >consensus CAUUAAACAGAACGAAAGAUCAAGAUGCAGCAGCUUCAGGCACUGGAGCAUCAUCGGAACAGUCCAAGGCCCAAGCCAAAUCCCAUUCGAAACCCA ............((((.......((((.....(((((((...)))))))..))))(((....)))..(((....)))........))))....... (-20.54 = -20.10 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:11 2006