Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,223,807 – 10,223,907 |
Length | 100 |
Max. P | 0.687727 |
Location | 10,223,807 – 10,223,907 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 86.24 |
Mean single sequence MFE | -39.40 |
Consensus MFE | -34.79 |
Energy contribution | -34.13 |
Covariance contribution | -0.65 |
Combinations/Pair | 1.20 |
Mean z-score | -1.58 |
Structure conservation index | 0.88 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10223807 100 - 22224390 AACUCCCCCGGCCAAGGGCAGUAGUUCCCUUAGCCUGGGAAGGUCUCAGGUGGAAAACGCUGUUCCAUUAGCGAUGAGU---------CAGGAGCUACCAAGCACCAGC .(((((((.(((.(((((........))))).))).)))...(((.(..((((((.......))))))..).)))))))---------..((.(((....))).))... ( -34.40) >DroSec_CAF1 20030 109 - 1 AGCUCCUCCGGUCAAGGGCAGUAGUUCUCUUAGCCUGGGGAGGUUCCAGGUGGGAAACGCUGCUCCAUCAGGGAUUUGUCAAGAUUCUCAGGAGCUACCAAGCACCAGC (((((((..(((...(((((((..(((((...(((((((.....))))))))))))..))))))).))).(((((((....))))))).)))))))............. ( -40.60) >DroSim_CAF1 20307 109 - 1 AGCUCCUCCGGUCAAGGGCAGUAGUUCUCUUAGCCUGGGGAGGUCCCAGGUGGGAAACGCUGCUCCAUCAGGGAUUUGUCUAGAUUCUCAGGAGCUACCAAGCACCAGC (((((((..(((...(((((((..(((((...(((((((.....))))))))))))..))))))).))).((((.((.....)).)))))))))))............. ( -43.20) >consensus AGCUCCUCCGGUCAAGGGCAGUAGUUCUCUUAGCCUGGGGAGGUCCCAGGUGGGAAACGCUGCUCCAUCAGGGAUUUGUC_AGAUUCUCAGGAGCUACCAAGCACCAGC ..((((((.(((.(((((........))))).))).))))))(((((.((((((.........)))))).)))))...............((.(((....))).))... (-34.79 = -34.13 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:10 2006