Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,216,174 – 10,216,265 |
Length | 91 |
Max. P | 0.941188 |
Location | 10,216,174 – 10,216,265 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 87.05 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -17.77 |
Energy contribution | -18.47 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.04 |
Mean z-score | -3.49 |
Structure conservation index | 0.74 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10216174 91 + 22224390 CGAAUACAUAUAGAUUCGCAUGUGUAACAUACAUAUGUG--UAUAUAUAUAGUGGGUAUAAUAUAGCCGACGACUAUAUAGUAAAAUGCGCAG ....(((((((((...((((((((((...))))))))))--..........((.(((........))).))..)))))).))).......... ( -21.70) >DroSec_CAF1 12503 93 + 1 CGAAUACAUAUAGAUUCGCAUGUGUAACAUACAUAUGUGCAUGUAUAUAUAGUGGGUAUAGUAUAGCCCACGACUAUAUAGUAAAAUGCGCAG ....((((((((.((.((((((((((...)))))))))).)).)))))...((((((........)))))).........))).......... ( -26.20) >DroSim_CAF1 12728 80 + 1 CGAAUACAUAUAGAUUCGCAUGUGCA---U----------AUAUAUAUAUAGUGGGUAUAGUAUAGCCCACGACUAUAUAGUAAAAUGCGCAG (((((........)))))..((((((---(----------...((((((..((((((........))))))...)))))).....))))))). ( -24.30) >consensus CGAAUACAUAUAGAUUCGCAUGUGUAACAUACAUAUGUG_AUAUAUAUAUAGUGGGUAUAGUAUAGCCCACGACUAUAUAGUAAAAUGCGCAG (((((........)))))..((((((((((....)))).....((((((..((((((........))))))...))))))......)))))). (-17.77 = -18.47 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:09 2006