Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,206,299 – 10,206,415 |
Length | 116 |
Max. P | 0.997865 |
Location | 10,206,299 – 10,206,415 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 95.34 |
Mean single sequence MFE | -37.78 |
Consensus MFE | -35.12 |
Energy contribution | -35.16 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.96 |
Structure conservation index | 0.93 |
SVM decision value | 2.95 |
SVM RNA-class probability | 0.997865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10206299 116 - 22224390 UUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAAAGUCUCACGGGUGAGCGAUGUCGAAACGCUUCCCUGGCGAAAGUGCUCCAAUAC .(((.((.((((((((.......))))))))))..(.(((((((((..((((....))))..))))((.((((..((((.........))))..))))..)).))))).))))... ( -36.20) >DroSec_CAF1 3290 116 - 1 UUUGAACGCAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAUAGUCUCACGGGUGAGCGAUGUUGAAACGCUUCCCUGGCGAAAGUGCUCCAAUAC .(((.((.((((((((.......))))))))))..(.((((((((((.((((....)))).)))))((.((((..((((.........))))..))))..)).))))).))))... ( -38.50) >DroSim_CAF1 3316 116 - 1 UUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAUAGUCUCACGGGUGAGCGAUGUCGAAACGCUUCCCUGGCGAAAGUGCUCCAGUAC .....((.((((((((.......))))))))))..(.((((((((((.((((....)))).)))))((.((((..((((.........))))..))))..)).))))).)...... ( -38.40) >DroEre_CAF1 4068 116 - 1 CUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCAGACUAACGAUGCGAAUCGAAAGUCUCACGGGUGAGCGAUGUAGAAACGCUUCCCUGGCGAAAGUGCUGCAAUAU ((((....((((((((.......)))))))).))))((((((((((..((((....))))..)))))..((((..((((.........))))..))))((....)))).))).... ( -37.90) >DroYak_CAF1 3720 116 - 1 UUCGAACACAUGUUUCACUUUACGAAGCAUGGCAAGUGCGCAGACUAACGAGGCGAAUCGAAAGUCUCACGGGUGAGCGAUGUCGAAACGCUUCCCUGGCGAAAGUGCUUCAAUAC ...(((..((((((((.......))))))))(((....((((((((..(((......)))..)))))..((((..((((.........))))..)))))))....))))))..... ( -37.90) >consensus UUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAAAGUCUCACGGGUGAGCGAUGUCGAAACGCUUCCCUGGCGAAAGUGCUCCAAUAC ........((((((((.......))))))))(((....(((.((((..((((....))))..))))...((((..((((.........))))..)))))))....)))........ (-35.12 = -35.16 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:57 2006