Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,180,099 – 10,180,190 |
Length | 91 |
Max. P | 0.983126 |
Location | 10,180,099 – 10,180,190 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 95.60 |
Mean single sequence MFE | -29.23 |
Consensus MFE | -26.55 |
Energy contribution | -27.11 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.20 |
Structure conservation index | 0.91 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10180099 91 + 22224390 AACCAUCUAUAUUCCAGCUCCCUUGGCAGUUUCGGUUUCAAGUGCCAUUGGAGCUGAAGCUCCUCCGGAUUGCUCACUUGAUGGCUUGGCC ..(((((.......(((((((..(((((.((........)).)))))..))))))).((((((...)))..))).....)))))....... ( -31.00) >DroSec_CAF1 8720 91 + 1 AACCAUCUAUAUCCCAGCUCCCUUGACAGUUUCGGUUUCAAGUGCCAAUGGAGCUGAAGCUCCUCCGGAUUGCUCACUUGAUGGCUUGGCC ..(((((.......(((((((.(((.((.((........)).)).))).))))))).((((((...)))..))).....)))))....... ( -24.70) >DroSim_CAF1 9884 91 + 1 AACCAUCUAUAUCCCAGCUCCCUUGGCAGUUUCGGUUUCAAGUGCCAUUGGAGCUGAAGCUCCUCCGGAUUGCCCACUUGAUGGCUUGGCC ..(((((.......(((.(((...((.((((((((((((((......))))))))))))))))...)))))).......)))))....... ( -30.84) >DroYak_CAF1 12817 91 + 1 AAGCAUCUAUAUCAUAGCUCCCUCGGCAGUUUCGGUUUCAAGUGCCAUUGGAGCUGAAGCUCCUCCGGAUUGCUCACUUGAUGGCUUGGCC ..((.....(((((.((((((...((.((((((((((((((......))))))))))))))))...)))..)))....))))).....)). ( -30.40) >consensus AACCAUCUAUAUCCCAGCUCCCUUGGCAGUUUCGGUUUCAAGUGCCAUUGGAGCUGAAGCUCCUCCGGAUUGCUCACUUGAUGGCUUGGCC ..(((((.......(((.(((...((.((((((((((((((......))))))))))))))))...)))))).......)))))....... (-26.55 = -27.11 + 0.56)
Location | 10,180,099 – 10,180,190 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 95.60 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -30.41 |
Energy contribution | -30.35 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -2.45 |
Structure conservation index | 0.96 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10180099 91 - 22224390 GGCCAAGCCAUCAAGUGAGCAAUCCGGAGGAGCUUCAGCUCCAAUGGCACUUGAAACCGAAACUGCCAAGGGAGCUGGAAUAUAGAUGGUU .....(((((((......((..(((...)))))(((((((((..(((((.((........)).)))))..))))))))).....))))))) ( -34.10) >DroSec_CAF1 8720 91 - 1 GGCCAAGCCAUCAAGUGAGCAAUCCGGAGGAGCUUCAGCUCCAUUGGCACUUGAAACCGAAACUGUCAAGGGAGCUGGGAUAUAGAUGGUU .....(((((((....((((..(((...)))))))(((((((.((((((.((........)).)))))).))))))).......))))))) ( -32.20) >DroSim_CAF1 9884 91 - 1 GGCCAAGCCAUCAAGUGGGCAAUCCGGAGGAGCUUCAGCUCCAAUGGCACUUGAAACCGAAACUGCCAAGGGAGCUGGGAUAUAGAUGGUU .....(((((((.....(((..(((...))))))((((((((..(((((.((........)).)))))..))))))))......))))))) ( -33.60) >DroYak_CAF1 12817 91 - 1 GGCCAAGCCAUCAAGUGAGCAAUCCGGAGGAGCUUCAGCUCCAAUGGCACUUGAAACCGAAACUGCCGAGGGAGCUAUGAUAUAGAUGCUU (((...))).......(((((.((.((((...))))((((((..(((((.((........)).)))))..))))))........))))))) ( -26.60) >consensus GGCCAAGCCAUCAAGUGAGCAAUCCGGAGGAGCUUCAGCUCCAAUGGCACUUGAAACCGAAACUGCCAAGGGAGCUGGGAUAUAGAUGGUU .....(((((((....((((..(((...)))))))(((((((..(((((.((........)).)))))..))))))).......))))))) (-30.41 = -30.35 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:55 2006