Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,133,806 – 1,133,925 |
Length | 119 |
Max. P | 0.998534 |
Location | 1,133,806 – 1,133,925 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -51.08 |
Consensus MFE | -41.36 |
Energy contribution | -44.16 |
Covariance contribution | 2.80 |
Combinations/Pair | 1.08 |
Mean z-score | -3.24 |
Structure conservation index | 0.81 |
SVM decision value | 3.13 |
SVM RNA-class probability | 0.998534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1133806 119 + 22224390 UGCGGGGGUACUGGCAGGCAUUGGGGUUCGGGCUCGCAACGGUGGUGCGGUGGCAUAUGGAAAUUGAUGCAGCAUCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC (((.((....)).)))..(((((((((...(((.(((..(((((((((((..((((((....))..)))).....)))))))).)))..))).))).......)))))))))....... ( -53.70) >DroSec_CAF1 30444 118 + 1 UGGGGGGGUACUGGGA-GCAUUGGGGUUGGGGCUCGCAACGGUGGUGCGGUGGCAAAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC .......(((((....-.(((((((((...(((.(((..((((((((((((.((((((....)))..)))....))))))))).)))..))).))).......)))))))))..))))) ( -54.70) >DroSim_CAF1 31917 119 + 1 UGGGGGGGUACUGGGAGGCAUUGGGGUUGGGGCUCGCAACGGUGGUGCGGUGGCAUAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC .......(((((......(((((((((...(((.(((..((((((((((((.((((((....))..))))....))))))))).)))..))).))).......)))))))))..))))) ( -54.30) >DroEre_CAF1 31893 117 + 1 CAGGGGGGUACUGGGCGGUAUUGGGGUAGGGGCUCGCAACGGUGG--CGGCGGCAUAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC (((.......))).((..(((((((((((.(((.(((..((((((--((.((((...((.(......).))...))))))))).)))..))).))).....)))))))))))...)).. ( -51.00) >DroYak_CAF1 31446 104 + 1 UGGGGGGGC-------------GGCUUAGGGGCUCGCAACGGUGG--CGAUGGCAUAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC ....(((((-------------((.((...(((.(((..((((((--((.((((...((.(......).))...))))))))).)))..))).)))..)).)))))))........... ( -41.70) >consensus UGGGGGGGUACUGGGAGGCAUUGGGGUUGGGGCUCGCAACGGUGGUGCGGUGGCAUAUGGAAAUUGAUGCAGCAGCUGCGCCGUCCGAAGCGUGCCAAAAAUUGCCCCAAUGAAAGUGC .......(((((......(((((((((...(((.(((..((((((((((((.((((..........))))....))))))))).)))..))).))).......)))))))))..))))) (-41.36 = -44.16 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:10 2006