Locus 3829

Sequence ID X_DroMel_CAF1
Location 10,169,275 – 10,169,395
Length 120
Max. P 0.732015
window6299

overview

Window 9

Location 10,169,275 – 10,169,395
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -37.23
Consensus MFE -30.85
Energy contribution -32.10
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.83
SVM decision value 0.43
SVM RNA-class probability 0.732015
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10169275 120 - 22224390
AUCAGUCCAAUUGGACGCAAAUCGAACUUCCACUCGCGCGAAAAAUGUCUGAUUGGACUCGUCCUGGUAACGUUGUGCUUCCUCUGCUUCGGCGGCAUCUUCCUUCUGCCGGACAAUUUC
...((((((((..((((....(((..(........)..)))....))))..)))))))).((((.((((.....(((((.((........)).)))))........))))))))...... ( -37.12)
>DroSim_CAF1 831 120 - 1
AUCAGUCCAAUUGGACGCAAAUCAAACUUCCACUCGCGCGAAAAAUGUCUGAUUGGACUCGUCCUGAUAACGUUGUGCUUCCUCUGCUUCGCCGGCAUCUUCCUCCUGCCGGACAACUUC
...((((((((..((((....((................))....))))..))))))))............(((((((.......))....((((((.........)))))))))))... ( -31.99)
>DroEre_CAF1 3853 120 - 1
AUCAGUCCAAUUGGACGCAAAUCAAACUUCCACUCGCGCGAGAAAUGUCUGAUUGGACUCGUCCUGGUAACGCUGUGCUUCCUCUGCUUCGCGGGCAUCUUCCUGCUGCCGGACAACUUC
...((((((((..((((.....).........(((....)))....)))..)))))))).((((.(((..(((...((.......))...)))((((......)))))))))))...... ( -37.60)
>DroYak_CAF1 902 120 - 1
AUAAGUCCAAUUGGACGCAAAUCGAACUUCCACUCGCGCGAGAAAUGUCUGAUUGGACUCGUCCUGGUAACGUUGUGCUUCCUCUGCUUCGGCGGCAUCUUCCUGCUGCCGGACAACUUC
...((((((((..((((....(((..(........)..)))....))))..))))))))............(((((((.......)).(((((((((......))))))))))))))... ( -42.20)
>consensus
AUCAGUCCAAUUGGACGCAAAUCAAACUUCCACUCGCGCGAAAAAUGUCUGAUUGGACUCGUCCUGGUAACGUUGUGCUUCCUCUGCUUCGCCGGCAUCUUCCUGCUGCCGGACAACUUC
...((((((((..((((....(((..(........)..)))....))))..)))))))).((((.......((((.((.......))..))))((((.........))))))))...... (-30.85 = -32.10 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:43 2006