Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,159,235 – 10,159,345 |
Length | 110 |
Max. P | 0.990837 |
Location | 10,159,235 – 10,159,345 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.64 |
Mean single sequence MFE | -32.17 |
Consensus MFE | -19.25 |
Energy contribution | -19.70 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.44 |
Structure conservation index | 0.60 |
SVM decision value | 2.23 |
SVM RNA-class probability | 0.990837 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10159235 110 + 22224390 CCUCCCCAUGUUCCUAUUUCUCGCACGUGUCUGUGUGCGAGAGUUGUGCAUUGAGUUGCAUAUGGCAUAUUUUUGGGGAUAUCGAGAGGACAU--GAU-------ACGUUUUUUCAUAU ..(((((((((.((...((((((((((......)))))))))).((((((......)))))).)).)))....))))))....((((((((..--...-------..)))))))).... ( -38.00) >DroEre_CAF1 27355 115 + 1 CCUCCCCAUGUUCCUAUUUCUCGCACGUGUCUGUGUGUGAGAGCU-UGCAUUGAGUUGCAUACGGAAAAU--UUG-GCAUACCGAUGGGUCUUAUGUCGCCCUUGAUGUAUUUUCCUUC ....(((((.((((....(((((((((......)))))))))(..-((((......))))..)))))...--.((-(....))))))))...(((((((....)))))))......... ( -30.30) >DroYak_CAF1 8154 102 + 1 CCUCCCCAUGUUCCUAUUUCUCGCACGUGCCCGUGUGUGAGAGCU-UGCAUUGACUUGCAUACGGAAAAU--UUG-GGAUACCAAUA-------------CCUUCAUGUAUUUUCAUAU ....((((..((((....(((((((((......)))))))))(..-((((......))))..)))))...--.))-)).....((((-------------(......)))))....... ( -28.20) >consensus CCUCCCCAUGUUCCUAUUUCUCGCACGUGUCUGUGUGUGAGAGCU_UGCAUUGAGUUGCAUACGGAAAAU__UUG_GGAUACCGAUAGG_C_U__G____CCUU_AUGUAUUUUCAUAU ..(((.((..((((...((((((((((......))))))))))...((((......))))...))))......)).)))........................................ (-19.25 = -19.70 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:33 2006