Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,156,848 – 10,156,943 |
Length | 95 |
Max. P | 0.994885 |
Location | 10,156,848 – 10,156,943 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 69.08 |
Mean single sequence MFE | -28.54 |
Consensus MFE | -10.52 |
Energy contribution | -11.94 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.15 |
Mean z-score | -2.53 |
Structure conservation index | 0.37 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10156848 95 + 22224390 GCCAACGUUGCGUAUGCGUAAUGGCCGAAAGGCGGCAUAAAA--UAGUUGGUACUA----------UGGUGCGUAUACUUGAUGUCCAUGCUUUUUAGCUUAGUACA---- (((..(((((((....)))))))(((....))))))......--......((((((----------(((.((((.......))))))).(((....))).)))))).---- ( -33.70) >DroSec_CAF1 3190 83 + 1 ----------------CGUAAUGGCCGAAAGGCGGCAUAAAA--UAGUUGGUACUA----------UGGUGCGUAUACUUAAUAUCCAUGCAUUGUAACUUGGUGCACGAU ----------------(((.((((((....))).((((...(--((((....))))----------).))))..............)))((((((.....))))))))).. ( -23.20) >DroSim_CAF1 5772 83 + 1 ----------------CGUAAUGGCCGAAAGGCGGCAUAAAA--UAGUUGGUACUA----------UGGUGCGUAUACUUAAUAUCCAUGCAUUUUAACUUGGUGCACGAU ----------------(((.((((((....))).((((...(--((((....))))----------).))))..............)))(((((.......)))))))).. ( -22.90) >DroEre_CAF1 24970 90 + 1 GCCAACGUUGCGUAUGCGUAAUGGCCGAAAGGCGGCAUAAAA--UAGUUGGUAC-------------------UACGGUGCGUAUAAUUUCUUUUUAACUCAGAACAAGAU (((..(((((((....)))))))(((....)))))).(((((--.(((((((((-------------------....))))...)))))...))))).............. ( -28.30) >DroYak_CAF1 5646 111 + 1 GCCAACGUUGCGUAUGCGUAAUGGCCGAAAGGCGGCAAAAAAUAUAGUUGGUACACUUGCGUAUACUUGUGCGUAUACUGCGUAUACUUGCUUUUUUACUAAGAACGAGAU (((..(((((((....)))))))(((....))))))..((((...(((.((((.((..((((((((......)))))).)))).)))).))).)))).............. ( -34.60) >consensus GCCAACGUUGCGUAUGCGUAAUGGCCGAAAGGCGGCAUAAAA__UAGUUGGUACUA__________UGGUGCGUAUACUUAAUAUCCAUGCUUUUUAACUUAGUACAAGAU .................((....(((....))).((((.......(((..((((((((......))))))))....)))........)))).............))..... (-10.52 = -11.94 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:32 2006