Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,132,563 – 1,132,675 |
Length | 112 |
Max. P | 0.870508 |
Location | 1,132,563 – 1,132,675 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.65 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -20.27 |
Energy contribution | -21.79 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.25 |
Mean z-score | -2.05 |
Structure conservation index | 0.66 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1132563 112 + 22224390 GAGCCGAAAGCAAAAGCCACAAAGCUUCGGCCAAGAAGGCAGAAGAAUUUGGGUAGGUGGGGAAAUUUGCGAAGCAACGACUACUUAUCAAAUGGUACAUUUUGCCUUUGAG (.((((((.((............)))))))))..((((((((((..((((((.(((((((......((((...))))...)))))))))))))......))))))))))... ( -33.60) >DroSec_CAF1 29210 103 + 1 GAGUCGAAAGCAAAAGCCACAAAGCUUCGGCCAAAAAGGCAGAACAAUUUGGGUAGGUGGGGAAAUUUGCGAAGUAACGACCACUUAUC---------AUUUUGCCUUUGAG ...(((((.((((((....((((..(((.(((.....))).)))...))))(((((((((......((((...))))...)))))))))---------.)))))).))))). ( -29.60) >DroSim_CAF1 30669 112 + 1 GAGUCGAAAGCAAAAGCCACAAAGCUUCGGCCAAGAAGGCAGACAAAUUUGGGUAGGUGGGGAAAUUUGCGAAGCAACGACCACUUAUCAAAUUGUACAUUUUGCCUUUGAG ...(((((.(((((((((.....((....))......)))..((((.(((((.(((((((......((((...))))...))))))))))))))))...)))))).))))). ( -32.60) >DroEre_CAF1 30649 102 + 1 GAGUCGAA------AGCCACAAAGCUUUGGCCAAGAG----GAAGAAUUUGGAAAGGUGGGGAAAUGUGCGGGGCACGAACCACUUAUCAAAUUGUUCAUUUUGCCUGUGAG ...(((((------(((......)))))(((.((((.----(((.(((((((..((((((.....(((((...)))))..)))))).))))))).))).)))))))..))). ( -29.20) >DroYak_CAF1 30190 107 + 1 GAGUCGAAAGCAAAAGCCACAAAGCUUUGGCCAAAAA----GAAGAGUUCGGAGAGGUGGUGGUAUGUGCGAGGUAAGAG-CACUUAUCAAAUUGUACAUUUCGCCUUUGGG ...(((((.((....(((((....(((((..(.....----.....)..)))))..)))))((.((((((((((((((..-..))))))...)))))))).)))).))))). ( -29.00) >consensus GAGUCGAAAGCAAAAGCCACAAAGCUUCGGCCAAGAAGGCAGAAGAAUUUGGGUAGGUGGGGAAAUUUGCGAAGCAACGACCACUUAUCAAAUUGUACAUUUUGCCUUUGAG (.((((((.((............)))))))))..((((((((((.......(((((((((......((((...))))...)))))))))..........))))))))))... (-20.27 = -21.79 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:09 2006