Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,143,130 – 10,143,237 |
Length | 107 |
Max. P | 0.557501 |
Location | 10,143,130 – 10,143,237 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 92.79 |
Mean single sequence MFE | -22.42 |
Consensus MFE | -16.06 |
Energy contribution | -16.38 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -2.52 |
Structure conservation index | 0.72 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10143130 107 - 22224390 AAUAUGAAGGUGAG----AGCAGGCGAGCGACA--AAAAAGCGAAGGACAAAGUUG-AAGCUCAGCGAAGCGAAAACUUUGAUAAAACUGUCCACAUAUCAAAUGCAAAUAAAU ....(((..(((.(----(.(((..((((..((--(.....(....)......)))-..))))..(((((......)))))......))))))))...)))............. ( -21.90) >DroSec_CAF1 32473 113 - 1 AAUAUGAAGGUGAGAAAGAGCAGGCAAGGGACAUAAAAAAGCGAAGGACAAAGUUG-AAGCUCAGCGAAGCGAAAACUUUGAUAAAAUUGUCCACAUAUCAAAUGCAAAUAAAU ...................(((......(((((........(....).(((((((.-..(((......)))...))))))).......)))))..........)))........ ( -19.89) >DroSim_CAF1 23725 113 - 1 AAUAUGAAGGUGAGAAAGACCAGGCAAGGGACAUAAAAAAGCGAAGGACAAAGUUG-AAGCUCAGCGAAGCGAAAACUUUGAUAAAAUUGUCCACAUAUCAAAUGCAAAUAAAU .(((((..(((.......))).......(((((........(....).(((((((.-..(((......)))...))))))).......))))).)))))............... ( -22.40) >DroYak_CAF1 25234 112 - 1 AAUAUGAAGGUGAGAAAAAGCUGGCCAGGGACAC--AAAAGCGAAGGACAAAGUUGGAAGCUCAGCGAGGCGAAAACUUUGAUAAAAUUGUCCACAUAUCAAAUGCAAAUAAAU .(((((..(((.((......)).)))..(((((.--.....(....).(((((((....(((......)))...))))))).......))))).)))))............... ( -25.50) >consensus AAUAUGAAGGUGAGAAAGAGCAGGCAAGGGACAU_AAAAAGCGAAGGACAAAGUUG_AAGCUCAGCGAAGCGAAAACUUUGAUAAAAUUGUCCACAUAUCAAAUGCAAAUAAAU .(((((...((........)).......(((((........(....).(((((((....(((......)))...))))))).......))))).)))))............... (-16.06 = -16.38 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:25 2006