Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,142,903 – 10,143,012 |
Length | 109 |
Max. P | 0.562257 |
Location | 10,142,903 – 10,143,012 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 89.51 |
Mean single sequence MFE | -12.07 |
Consensus MFE | -10.69 |
Energy contribution | -10.50 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -1.35 |
Structure conservation index | 0.89 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10142903 109 - 22224390 UAAAACAGGGAUUUAAUACACAUAUCAAAAUAAUCCCAGGAAAAA--CCAACGAGUGAACAAGGCAAAAAA-AAAAAAACUUUAUAUCCCUGCC--AGAACAUUUAACAUUGAU .......((((((..................)))))).((.....--))...(((((.....((((.....-..................))))--....)))))......... ( -12.17) >DroSec_CAF1 32262 105 - 1 UAAAACAGGGAUUUAAUACACAUAUCAAAAUAAUCCCAGGAAAAA--CCAACGAGUGAACAAAGCUAA-------AAAACUUUAUAUCCCUGCCACAGAACAUUUAACAUUGCU .....(((((((.(((......................((.....--))....(((.......)))..-------......))).)))))))...................... ( -12.40) >DroSim_CAF1 23513 105 - 1 UAAAACAGGGAUUUAAUACACAUAUCAAAAUAAUCCCAGGAAAAA--CCAACGAGUGAACAAAGCUAA-------AAAACUUUAUAUCCCUGCCACAGAACAUUUAACAUUGCU .....(((((((.(((......................((.....--))....(((.......)))..-------......))).)))))))...................... ( -12.40) >DroYak_CAF1 25008 112 - 1 UCAAACAGGGAUUUAAUACGCACAUCAAAAUAAUCCCAGGAAAAAACCCAACAAGUGUACAAAGCAAAAAAAAAAAAAACUUUAUAUUCCUGCC--AGAACAUUUAACAUUGAU ((((...((((((..................)))))).((.......))...((((((.(...(((........................))).--.).))))))....)))). ( -11.33) >consensus UAAAACAGGGAUUUAAUACACAUAUCAAAAUAAUCCCAGGAAAAA__CCAACGAGUGAACAAAGCAAA_______AAAACUUUAUAUCCCUGCC__AGAACAUUUAACAUUGAU .....(((((((.(((.................((....)).............(....).....................))).)))))))...................... (-10.69 = -10.50 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:25 2006