Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,140,457 – 10,140,571 |
Length | 114 |
Max. P | 0.885376 |
Location | 10,140,457 – 10,140,571 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.74 |
Mean single sequence MFE | -22.25 |
Consensus MFE | -14.23 |
Energy contribution | -14.72 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.64 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10140457 114 + 22224390 UGGUGGCAUU-UGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUUGCCACCCCCCCCCCCCCCCUCUUUUAACUCGUU-UCCU .(((((((.(-((((.....((.....))...........((.((.....)).))................))))).)))))))...........................-.... ( -22.30) >DroSec_CAF1 29916 102 + 1 CGGGGGCAUUUUGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUUGGC-------------CCCCCUUUUAUACCGUU-UCUC .((((((...(((((.....((.....))...........((.((.....)).))................)))))...))-------------)))).............-.... ( -23.10) >DroSim_CAF1 21368 102 + 1 CGGGGGCAUUUUGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUUGGC-------------CCCCCUUUUAUACCGUU-UCCC .((((((...(((((.....((.....))...........((.((.....)).))................)))))...))-------------)))).............-.... ( -23.10) >DroYak_CAF1 22198 108 + 1 CGGGGGCAUU-UGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUCGGCACCCCCUCCCCCCUCCU-------CCAAUUUCCCC .(((((....-.(((.............))).........((.((.....)).))...............((((....)))))))))...........-------........... ( -20.52) >consensus CGGGGGCAUU_UGGCCUCCACUUUAUUAGCCUCAUUAAACGCACUCGAAAAGCGCAAAACUCUCACCUACUGCCGAUUGGC_____________CCCCCUUUUAUACCGUU_UCCC .((((((......)))))).....................((.((.....)).))................(((....)))................................... (-14.23 = -14.72 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:24 2006