Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,138,935 – 10,139,038 |
Length | 103 |
Max. P | 0.708722 |
Location | 10,138,935 – 10,139,038 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 92.85 |
Mean single sequence MFE | -20.50 |
Consensus MFE | -17.02 |
Energy contribution | -16.90 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.83 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10138935 103 + 22224390 AUUCAAAUUGAAAAGAAGAACACCAAGGACUAAAGGUCCUUUAAGCUUUCUACUGCAACUUUAAUGGAACACCCUCCACGGAUUUAACCUUAAUGCAUAGAAA .(((.....)))............((((((.....))))))......(((((.((((.......((((......)))).((......))....))))))))). ( -18.90) >DroSec_CAF1 28430 102 + 1 AUUCAAGUUGAAAAGAAGAACACCAAGGACUA-AGGUCCUUUAAGCUUUCUACUGCAACUUUAAUGGAACACCCUCCACGGAUUUAGACUUAAUGCAUAGAAA .(((((((((...((.((((....((((((..-..))))))......)))).)).))))))...((((......)))).....................))). ( -19.90) >DroSim_CAF1 19886 102 + 1 AUUCAAGUUGAAAAGAAGAACACCAAGGACUA-AGGUCCUUUAAGCUUUCUACUGCAACUUUAAUGGAACACCCUCCACGGAUUUAGACUUAAUGCAUAGAAA .(((((((((...((.((((....((((((..-..))))))......)))).)).))))))...((((......)))).....................))). ( -19.90) >DroYak_CAF1 20680 100 + 1 AUUCAUAAUGAACA-AAGGGCA-CAAGGACUA-AGGUCCUUUAAGCUAUCUGCUGCAACUUUAAUGGAACACCCUCCACGGAUUUAGCCUUAAUGCACAGAAA ..............-...(((.-.((((((..-..))))))...))).((((.((((.......((((......)))).((......))....)))))))).. ( -23.30) >consensus AUUCAAAUUGAAAAGAAGAACACCAAGGACUA_AGGUCCUUUAAGCUUUCUACUGCAACUUUAAUGGAACACCCUCCACGGAUUUAGACUUAAUGCAUAGAAA .(((.....)))............((((((.....)))))).....((((((.((((.......((((......)))).(........)....)))))))))) (-17.02 = -16.90 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:17 2006