Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,132,371 – 10,132,480 |
Length | 109 |
Max. P | 0.941647 |
Location | 10,132,371 – 10,132,480 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 80.59 |
Mean single sequence MFE | -15.23 |
Consensus MFE | -10.52 |
Energy contribution | -10.97 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.05 |
Mean z-score | -2.29 |
Structure conservation index | 0.69 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10132371 109 + 22224390 CAAUGCUAAGCAUAAUUUGCUCAGUUCUCCUUUCAAGUU-------UUUCCCCUUUGCGAACCAUUUCUGUUUUUGCUAAGGAUACCUUUAAUUCCCCUUCGCAUUUACAUCACUU .(((((..((((.....))))..................-------.....((((.(((((.((....))..))))).))))...................))))).......... ( -14.70) >DroSec_CAF1 21974 115 + 1 CAAUGCUAAGCAUAAUUUGCUCAGCUCUCCUUUCAAGUUUACCCCUUUACCCCUUUGCGAACCAUUUCUGUU-UUGCUAAGGAUACCUUUAAUUCCCCUUCGUAUUUACAUCACUU ....(((.((((.....)))).)))..........................((((.(((((.((....)).)-)))).)))).................................. ( -17.40) >DroSim_CAF1 13378 85 + 1 CAAUGCUAAGCAUAAUUUG------------------------------CCCCUUUGCGAACCAUUUCUGUU-UUGCUAAGGAUACCUUUAAUUCCCCUUCGUAUUUACAUCACUU .(((((...(((.....))------------------------------).((((.(((((.((....)).)-)))).))))...................))))).......... ( -13.60) >consensus CAAUGCUAAGCAUAAUUUGCUCAG_UCUCCUUUCAAGUU_______UU_CCCCUUUGCGAACCAUUUCUGUU_UUGCUAAGGAUACCUUUAAUUCCCCUUCGUAUUUACAUCACUU .(((((..((((.....))))..............................((((.((((..((....))...)))).))))...................))))).......... (-10.52 = -10.97 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:16 2006