Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,131,075 – 10,131,167 |
Length | 92 |
Max. P | 0.655912 |
Location | 10,131,075 – 10,131,167 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -17.52 |
Consensus MFE | -12.22 |
Energy contribution | -12.72 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.28 |
Structure conservation index | 0.70 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10131075 92 - 22224390 UUAAACCUC-UUUUAAGGCCGCCCAAG-CCGCCCAACUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU .........-......(((.((....)-).)))..........((((((((.(((((..(((((......)))))))))).)))).)))).... ( -21.00) >DroSim_CAF1 12077 92 - 1 UUAAACCUC-UUUUAAGGCCGCCCAAG-CCGCCCAAGUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU .........-......(((.((....)-).)))..........((((((((.(((((..(((((......)))))))))).)))).)))).... ( -21.00) >DroEre_CAF1 21572 90 - 1 CUAUACC---UCUUAAGGCCGCCCAAG-CCGCCCAACUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU .......---......(((.((....)-).)))..........((((((((.(((((..(((((......)))))))))).)))).)))).... ( -21.00) >DroYak_CAF1 12467 86 - 1 CCA-------UUUUAAAGCCACCCAAG-CCGCCCAACUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU ...-------......(((((....((-(.........((..((((((.((.(........).))))))))..))....)))....)))))... ( -15.42) >DroAna_CAF1 27222 70 - 1 -------------UAGAGCCCCCC----CCCCC-------UAAGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU -------------...........----.....-------..(((((((((.(((((..(((((......)))))))))).)))).)))))... ( -15.40) >DroPer_CAF1 28471 86 - 1 -----CCUCCUCCUGCUGCUGCUACACACACCCCACUGUAUC---CACUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU -----...............((((..((((...((.((....---)).))..))))...........(((((.....)))))....)))).... ( -11.30) >consensus _UA__CC___UUUUAAGGCCGCCCAAG_CCGCCCAACUUAUCCGCCAGUGAAUGUGAUCUAAAUCUUGGCGUUUAUUACGCUCACUUGGCUCCU ...........................................((((((((.(((((..(((((......)))))))))).)))).)))).... (-12.22 = -12.72 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:15 2006