Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,108,931 – 10,109,048 |
Length | 117 |
Max. P | 0.798890 |
Location | 10,108,931 – 10,109,048 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -16.37 |
Energy contribution | -17.24 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.12 |
Mean z-score | -2.24 |
Structure conservation index | 0.63 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10108931 117 + 22224390 AUUACAGUUCUUUUGAAAAAUUUCUUAUGAA-UUAUGUCCGCAAAAUGUAUUAGAAGUUUUU-UUUUAGUGUAUGCUCAUCUUAGCAUGCAUAUCAACGAACUCUCUGAGAACUGUGUU ..((((((((((..(((((((((((.(((.(-((.((....)).))).))).))))))))))-)....(((((((((......)))))))))...............)))))))))).. ( -32.30) >DroSim_CAF1 28070 117 + 1 GUUACAGUUAUUUCUAAAAAUUUCUCAUGAUUUUAUGACUGCAACAUGCAUUAGACGUUUU--UUUCAGUGUAUGCGCAUCUUAGCAUGCAUAUCAACGAACUCUCUGAGAACUGUGUU ..(((((((...(((((.......(((((....))))).(((.....)))))))).((((.--.....((((((((........))))))))......))))........))))))).. ( -25.00) >DroYak_CAF1 24762 111 + 1 AUAGCAGUAAUUUGUAAAUAUUGAUAAUGAUUUUAU-----CAUAAUG---UAGAAGUUUUUUUUUCAGUGCUUGCACAUCUUAGCAUGCAUAUCAACGAACUCUCUGAGAACUGUGUU ...((((((((((.((.....((((((.....))))-----)).....---)).)))))....(((((((((.(((........))).))).......(....).)))))))))))... ( -21.00) >consensus AUUACAGUUAUUUCUAAAAAUUUCUAAUGAUUUUAUG_C_GCAAAAUG_AUUAGAAGUUUUU_UUUCAGUGUAUGCACAUCUUAGCAUGCAUAUCAACGAACUCUCUGAGAACUGUGUU ...((((((...............................((.....)).((((((((((........((((((((........))))))))......))))).))))).))))))... (-16.37 = -17.24 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:14 2006