Locus 381

Sequence ID X_DroMel_CAF1
Location 1,132,049 – 1,132,150
Length 101
Max. P 0.593113
window580

overview

Window 0

Location 1,132,049 – 1,132,150
Length 101
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 82.69
Mean single sequence MFE -43.00
Consensus MFE -30.46
Energy contribution -32.50
Covariance contribution 2.04
Combinations/Pair 1.13
Mean z-score -1.64
Structure conservation index 0.71
SVM decision value 0.12
SVM RNA-class probability 0.593113
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1132049 101 - 22224390
CGUCGGGCCGUCAAAACGGC----GCGUCGGUCGGUUGGCAGUGCUUCGCGUCAACCGGACUCGAACGCAACGCCGCCA-CAGCGAGCCGACGCUCCACCAACCCA
.((.(((((((....)))))----((((((((((.(((((.((((((((.(((.....))).)))).)).))...))))-.).))).)))))))....)).))... ( -44.70)
>DroSec_CAF1 28711 101 - 1
CGUCGGGCCGUCAGAGCGGC----GCGUCGGUCGCUUGGCAGUGCUUCGCGUCAACCGGACUCGAACGCAACGCCGCCA-CAGCGAGCCGACGCUCCACCAACCCA
.((.(((((((....)))))----((((((((((((((((.((((((((.(((.....))).)))).)).))...))))-.))))).)))))))....)).))... ( -49.50)
>DroSim_CAF1 30164 101 - 1
CGUCGGGCCGUCAGAGCGGC----GCGUCGGUCGCUUGGCAGUGCUUCGCGUCAACCGGACUCGAACGCAACGCCGCCA-CAGCGAGCCGACGCUCCACCAACCCA
.((.(((((((....)))))----((((((((((((((((.((((((((.(((.....))).)))).)).))...))))-.))))).)))))))....)).))... ( -49.50)
>DroEre_CAF1 30083 101 - 1
AGUCGCGUCGGUCGUUCGGCCUUUCCGUCGGUCGGCUGGCAGUGUUUCGCGUCAACCGGACUCGAACGCAACGCCGCCAACUG-----CGCCGCUCCAACCCACCA
(((.(((.((((.....((((........))))(((.(((..(((((((.(((.....))).)))).)))..)))))).))))-----))).)))........... ( -35.00)
>DroYak_CAF1 29699 98 - 1
AGUCGCGUCGGUCGUUCGGCCUUUCCGUCGGUCGCUUGGCAGUGCUUCGCGUCAACCGGACUCGAACGCAACGCCGCCAACUG-----CGACGCUCCAACCCA---
.(((((((.(((....(((((........)))))...(((..(((((((.(((.....))).)))).)))..)))))).)).)-----))))...........--- ( -36.30)
>consensus
CGUCGGGCCGUCAGAGCGGC____GCGUCGGUCGCUUGGCAGUGCUUCGCGUCAACCGGACUCGAACGCAACGCCGCCA_CAGCGAGCCGACGCUCCACCAACCCA
......(((((....)))))....((((((((((((((((..(((((((.(((.....))).)))).)))..)))).....))))).)))))))............ (-30.46 = -32.50 +   2.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:08 2006