Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,104,102 – 10,104,221 |
Length | 119 |
Max. P | 0.536616 |
Location | 10,104,102 – 10,104,221 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.49 |
Mean single sequence MFE | -36.07 |
Consensus MFE | -26.72 |
Energy contribution | -27.17 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.15 |
Structure conservation index | 0.74 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10104102 119 - 22224390 GGACCCUGACUAACCUAUA-CCACGUCCUCUUUCCAGACAGCCCCUCGGUUGGGCCCCACUCCAAACUGGCCCAUCAAUUUUGGUUCUCCUACCCGCCACCGGGCGCUGGCGGCGGUUCC ((((((((((.........-....)))......((((...((((...(((((((((............))))))........(((......))).)))...)))).)))).)).))))). ( -34.72) >DroYak_CAF1 20334 120 - 1 GAACCCGGACUCACCUGUAUCCACAUCCUCUUUCCAGCCAGCCCCUCGGUUGGGCGCCACGCCAAACUGGCCCAUCAAUUUUGGUUCUCCUACCCGCCACCGGGCGCUGGCGGCGGUUCC (((((.(((..(....)..)))...........((.((((((.((.((((..((((....(((.....)))...........(((......))))))))))))).)))))))).))))). ( -43.60) >DroAna_CAF1 33669 93 - 1 ---------------------------UUUUGCGCAGGCAGCCCAUCGGUUGGGACUUGAUCCAAACUGGCCCAUCAAUUUUGGUUCUCCUACCCGCCACCGGGCGCUGGCGGCGGUUCC ---------------------------.....(((.(.((((.....((.(((((...((.(((((.(((....)))..))))).))))))).))(((....))))))).).)))..... ( -29.90) >consensus G_ACCC_GACU_ACCU_UA_CCAC_UCCUCUUUCCAGACAGCCCCUCGGUUGGGCCCCACUCCAAACUGGCCCAUCAAUUUUGGUUCUCCUACCCGCCACCGGGCGCUGGCGGCGGUUCC .................................((((.(((((....)))))(((.....)))...)))).(((.......))).........(((((.((((...)))).))))).... (-26.72 = -27.17 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:12 2006