Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,097,732 – 10,097,830 |
Length | 98 |
Max. P | 0.715772 |
Location | 10,097,732 – 10,097,830 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 77.54 |
Mean single sequence MFE | -26.17 |
Consensus MFE | -15.54 |
Energy contribution | -18.30 |
Covariance contribution | 2.76 |
Combinations/Pair | 1.11 |
Mean z-score | -1.79 |
Structure conservation index | 0.59 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10097732 98 + 22224390 AUGCACCUGUGCGCUGAUGGGGU-UUACCUGGCAGGUCGAUUAAUGACUUGGCCUUAAUGAAAAAUUAACCAUUUUAAUUUGAGGCCAACGCAGAAGCA .(((..(((((..(((..(((..-...)))..)))((((.....))))((((((((((...(((((.....)))))...)))))))))))))))..))) ( -30.50) >DroSec_CAF1 15746 98 + 1 AUGCACCUGUGCGCUGGUGGGUU-UUACCUGGCAGGUCGAUUAAUGACUUUGCCUUAAUGAAAAAUUAACCAUUUUAAUUUGAGGCCAACGCAGAAGCA .(((..(((((..(((.((((..-...)))).)))((((.....))))...(((((((...(((((.....)))))...)))))))...)))))..))) ( -26.10) >DroEre_CAF1 20057 98 + 1 AUGCACCUGUGUGCUGGUGGGGC-UUACCUUGCAGGUCGAUUAAUGACUUGGCCUUAAUGAAAAAUUAAGCAUUUUAAUUUGAGGCCAACGCAAAAGCA .(.((((........)))).)((-((...((((((((((.....))))))((((((((...(((((.....)))))...))))))))...)))))))). ( -29.30) >DroYak_CAF1 13281 99 + 1 AUGCACCUGUGUGCUGGUGGGGUUUUAGCUGGCAGGUCGAUUAAUGACAUGGCCUUAAUGAAAAAUUAACCAUUUUAAUUUGAGGUCAACGAAGAAGCA .(((((((((..(((((.......)))))..))))))............(((((((((...(((((.....)))))...)))))))))........))) ( -26.30) >DroAna_CAF1 25530 74 + 1 AUGCAC-UGCCCCCUAAUGGG------------------------GACUUGGUCCUCAUAAAAAAUUAAACAUCUUGGCUUGAGGCCAUGCCAACAGCC ..(((.-...((((....)))------------------------)...(((.(((((......................)))))))))))........ ( -18.65) >consensus AUGCACCUGUGCGCUGGUGGGGU_UUACCUGGCAGGUCGAUUAAUGACUUGGCCUUAAUGAAAAAUUAACCAUUUUAAUUUGAGGCCAACGCAGAAGCA ..((..(((((..(((.((((......)))).)))..............(((((((((...(((((.....)))))...))))))))).)))))..)). (-15.54 = -18.30 + 2.76)
Location | 10,097,732 – 10,097,830 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 77.54 |
Mean single sequence MFE | -23.96 |
Consensus MFE | -11.21 |
Energy contribution | -12.04 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.23 |
Mean z-score | -1.97 |
Structure conservation index | 0.47 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.714934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10097732 98 - 22224390 UGCUUCUGCGUUGGCCUCAAAUUAAAAUGGUUAAUUUUUCAUUAAGGCCAAGUCAUUAAUCGACCUGCCAGGUAA-ACCCCAUCAGCGCACAGGUGCAU .((((.(((((((((((........(((((........)))))..(((...(((.......)))..)))))))..-.......))))))).)))).... ( -23.00) >DroSec_CAF1 15746 98 - 1 UGCUUCUGCGUUGGCCUCAAAUUAAAAUGGUUAAUUUUUCAUUAAGGCAAAGUCAUUAAUCGACCUGCCAGGUAA-AACCCACCAGCGCACAGGUGCAU .((((.((((((((...........(((((........)))))..((((..(((.......))).)))).((...-...)).)))))))).)))).... ( -26.40) >DroEre_CAF1 20057 98 - 1 UGCUUUUGCGUUGGCCUCAAAUUAAAAUGCUUAAUUUUUCAUUAAGGCCAAGUCAUUAAUCGACCUGCAAGGUAA-GCCCCACCAGCACACAGGUGCAU .((((((((.(((((((......(((((.....)))))......)))))))(((.......)))..))))...))-)).......((((....)))).. ( -24.90) >DroYak_CAF1 13281 99 - 1 UGCUUCUUCGUUGACCUCAAAUUAAAAUGGUUAAUUUUUCAUUAAGGCCAUGUCAUUAAUCGACCUGCCAGCUAAAACCCCACCAGCACACAGGUGCAU .(((.....(((((((............)))))))..........(((...(((.......)))..)))))).............((((....)))).. ( -19.20) >DroAna_CAF1 25530 74 - 1 GGCUGUUGGCAUGGCCUCAAGCCAAGAUGUUUAAUUUUUUAUGAGGACCAAGUC------------------------CCCAUUAGGGGGCA-GUGCAU ........(((((((((((....(((((.....)))))...))))).))..(((------------------------(((....)))))).-)))).. ( -26.30) >consensus UGCUUCUGCGUUGGCCUCAAAUUAAAAUGGUUAAUUUUUCAUUAAGGCCAAGUCAUUAAUCGACCUGCCAGGUAA_ACCCCACCAGCGCACAGGUGCAU .((.((((.((((((((......(((((.....)))))......))))))............(((.....)))..............)).)))).)).. (-11.21 = -12.04 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:07 2006