Locus 3804

Sequence ID X_DroMel_CAF1
Location 10,096,693 – 10,096,786
Length 93
Max. P 0.737164
window6256

overview

Window 6

Location 10,096,693 – 10,096,786
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.34
Mean single sequence MFE -23.63
Consensus MFE -16.78
Energy contribution -17.00
Covariance contribution 0.22
Combinations/Pair 1.06
Mean z-score -2.35
Structure conservation index 0.71
SVM decision value 0.44
SVM RNA-class probability 0.737164
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10096693 93 - 22224390
------------------------AGAAGGAAAGGCCAUGUAGGCCCCAGAGCAUAAGCCGAAAAGGCAAUCUCGUAAAAAACACGCAUUUCCAUCCAUCUGUAGUACUACU---ACAAA
------------------------.((.(((((((((.....)))).....((....(((.....)))......((.....))..)).))))).))....(((((.....))---))).. ( -24.10)
>DroSec_CAF1 14816 93 - 1
------------------------AGAAGGAAAGGCCAUGUAGGCCCCAGAGCAUAAGCCGAAAAGGCAAUCUCGUAAAAAACACGCAUUUCCAUCCAUCUGUAGUACUACU---ACAAG
------------------------.((.(((((((((.....)))).....((....(((.....)))......((.....))..)).))))).))....(((((.....))---))).. ( -24.10)
>DroSim_CAF1 14060 93 - 1
------------------------AGAAGGAAAGGCCAUGUAGGCCCCAGAGCAUAAGCCGAAAAGGCAAUCUCGUAAAAAACACGCAUUUCCAUCCAUCUGUAGUACUACU---ACAAG
------------------------.((.(((((((((.....)))).....((....(((.....)))......((.....))..)).))))).))....(((((.....))---))).. ( -24.10)
>DroEre_CAF1 19047 89 - 1
------------------------AGAGGGAAAGGACAUGUAGGCCCCAGAGCGUAAGCCAAAAAGGCAAUCUCGUAAAAAACACGCAUUUCCAUCCAUCUGUAGUACUACAC-------
------------------------(((.(((..(((.((((..(((.....((....))......)))......((.....))..)))).))).))).)))(((....)))..------- ( -18.90)
>DroYak_CAF1 12282 94 - 1
------------------------AGAAGGAAAGGCCAUGUAGGCCCCAGAGCAUAAGCCGAAAAGGCAAUCUCGUAAAAAACACGCAUUUCCAUCCAUCUGUAGUACUACAC--ACUCG
------------------------.((.(((((((((.....)))).....((....(((.....)))......((.....))..)).))))).))....((((....)))).--..... ( -21.00)
>DroAna_CAF1 23829 120 - 1
ACAAAAAAAGUGAAAAAAUAUAGGGAAUGGGAGUGCCAUGUAGGCCCCAGAGUAUAAGCCGAAAAGGCAAUCUCAUAAAAAACACGCACUGCCAUCCAUCUGUAGUACUACACACACUAG
.........(((......((((((((.(((.(((((..(((.(....).(((.....(((.....)))...))).......))).))))).))))))..)))))......)))....... ( -29.60)
>consensus
________________________AGAAGGAAAGGCCAUGUAGGCCCCAGAGCAUAAGCCGAAAAGGCAAUCUCGUAAAAAACACGCAUUUCCAUCCAUCUGUAGUACUACA___ACAAG
............................(((((((((.....))))...(((.....(((.....)))...)))..............)))))........(((....)))......... (-16.78 = -17.00 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:05 2006