Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,091,886 – 10,091,982 |
Length | 96 |
Max. P | 0.802821 |
Location | 10,091,886 – 10,091,982 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 97.92 |
Mean single sequence MFE | -23.00 |
Consensus MFE | -20.30 |
Energy contribution | -20.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.88 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10091886 96 - 22224390 GCAGAAAGCGGCAAAAGAUAAUCGCCAAUGAUGCGAUUUUAAGUGCAGACAGCCAAGUGUCAGCAGAAAUCAAACCGAAAGGGUUAAAGGAAAACA (((...(..(((...........)))..)..)))((((((...(((.((((......)))).)))))))))...((....)).............. ( -21.20) >DroSim_CAF1 8063 96 - 1 GCUGAAAGCGGCAAAAGAUAAUCGCCAAUGAUGCGAUUUUAAGUGCAGACAGCCAAGUGUCAGCAGAAAUCAAACCGAAAGGGUUAAAGGAAAACA (((((..((.(((......((((((.......)))))).....))).....))......)))))..........((....)).............. ( -22.00) >DroEre_CAF1 14155 96 - 1 GCAGAAAGCGGCAAAAGAUAAUCGCCAAUGAUGCGAUUUUAAGUGCAGACAGCCAAGUGUCAGCAGAAAUCAAACCGAAAGGGUUAAAGGCGAACA ((.....))............(((((..((((..((((((...(((.((((......)))).)))))))))...((....))))))..)))))... ( -25.80) >consensus GCAGAAAGCGGCAAAAGAUAAUCGCCAAUGAUGCGAUUUUAAGUGCAGACAGCCAAGUGUCAGCAGAAAUCAAACCGAAAGGGUUAAAGGAAAACA .......((.(((......((((((.......)))))).....))).((((......)))).))..........((....)).............. (-20.30 = -20.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:04 2006