Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 168,502 – 168,608 |
Length | 106 |
Max. P | 0.506178 |
Location | 168,502 – 168,608 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 76.90 |
Mean single sequence MFE | -19.05 |
Consensus MFE | -11.56 |
Energy contribution | -13.38 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.06 |
Mean z-score | -1.67 |
Structure conservation index | 0.61 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506178 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 168502 106 - 22224390 ---AGCAAAAAACCAAAUUCAGAAACUACAAAAAAAACAGCGGUAGGCACCAAAAAGCGAAAAGUCACACGCUUUUGCUGCAUAGCGAUAGCAUUUUCACUUGCUGGCC ---..................................(((((((....)))...(((.((((((.....)(((.(((((....))))).))).))))).)))))))... ( -20.70) >DroEre_CAF1 5525 106 - 1 ---AGCAGAAAACCAAAAUCAAAAAAUACAAAACACAAAGCGGUGGGCACCCAAAAGCGAAAACUCACACGCUUUUGCUGCAUAGCGAAAGCAGUUUCACUUGCUGGCC ---(((((.((((..........................(((((((....))(((((((..........))))))))))))...((....)).))))...))))).... ( -24.70) >DroYak_CAF1 3783 106 - 1 ---AGCAGAAAAUCAAAAUCAAAAAAUACAAAACACAAAGCGGUAGACACCAAAAAGCGAAAAGUCACACGCUUUUGCUGCACAGCGAAAGCAGUUUCACUUGCUGGCC ---...................................((((((....)))...(((.((((.(.....)(((((((((....)))))))))..)))).)))))).... ( -20.60) >DroMoj_CAF1 9281 95 - 1 AACAGCAGAAAGCAAAAGCCAACAA---CGAAAAAUAAA---------UCC--AAAAAGAAAAGUCGCACGCUUUUACUGGAAAGCCAAACCAAUUUCACUUGCCGUCU .((.(((((((((....))......---...........---------(((--(.....((((((.....))))))..))))............))))...))).)).. ( -10.20) >consensus ___AGCAGAAAACCAAAAUCAAAAAAUACAAAAAACAAAGCGGUAGGCACCAAAAAGCGAAAAGUCACACGCUUUUGCUGCAUAGCGAAAGCAGUUUCACUUGCUGGCC ...(((((.................................(((....)))...................(((((((((....)))))))))........))))).... (-11.56 = -13.38 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:01 2006