Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,078,681 – 10,078,781 |
Length | 100 |
Max. P | 0.928681 |
Location | 10,078,681 – 10,078,781 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -26.15 |
Consensus MFE | -20.68 |
Energy contribution | -21.68 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.09 |
Structure conservation index | 0.79 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10078681 100 + 22224390 --CAGGC------AGCCGGAUUAUUAUAUCAUGCAACAGCGUUUUCAAAUUUGUUAAUUUUCUGUGCAUUUUUGUAUAAAUUAUUUAAUGCGCGCUAUUGCGCAUGCG------------ --...((------(((..(((......)))..((((.(((......(((((....)))))...(((((((...(((.....)))..)))))))))).)))))).))).------------ ( -23.20) >DroSec_CAF1 4935 100 + 1 --CAGGC------AGCCGGAUUAUUAUAUCAUGCAACAGCGUUUUCAAAUUUGUUAAUUUUCUGUGCAUUUUUGUAUAAAUUAUUUAAUGCGCGCUGUUGCGCAUGCG------------ --...((------(((..(((......)))..((((((((......(((((....)))))...(((((((...(((.....)))..))))))))))))))))).))).------------ ( -29.20) >DroSim_CAF1 4685 100 + 1 --CAGGC------AGCCGGAUUAUUAUAUCAUGCAACAGCGUUUUCAAAUUUGUUAAUUUUCUGUGCAUUUUUGUAUAAAUUAUUUAAUGCGCGCUGUUGCGCAUGCG------------ --...((------(((..(((......)))..((((((((......(((((....)))))...(((((((...(((.....)))..))))))))))))))))).))).------------ ( -29.20) >DroEre_CAF1 4987 106 + 1 --CAGGCAGCGGCAGCCGGACUAUUAUAUCAUGCAACAUCGUUUUCAAAUUUGUUAAUUUUCUGUGCAUUUUUGUAUAAAUUAUUUAAUGCGCGCUGUUGCGCAUGCG------------ --...((.((((((((.(((..((((...((....................)).))))..)))(((((((...(((.....)))..))))))))))))))))).....------------ ( -25.25) >DroPer_CAF1 4548 113 + 1 AGUCGUC------AGCCGGAUUAUUAUAUCAUGCAACAUAA-UUUGAAAUUUGUUAAUUUUGUGUGCAUUUUUGUAUAAAUUAUUUAAUGCGCGUUGUUGCGCAUGUUACCCCGACCCCA .((((..------..........((((((.(((((.(((((-.((((......))))..))))))))))....))))))........(((((((....))))))).......)))).... ( -23.90) >consensus __CAGGC______AGCCGGAUUAUUAUAUCAUGCAACAGCGUUUUCAAAUUUGUUAAUUUUCUGUGCAUUUUUGUAUAAAUUAUUUAAUGCGCGCUGUUGCGCAUGCG____________ ..............((..(((......)))..((((((((......(((((....)))))...(((((((...(((.....)))..)))))))))))))))))................. (-20.68 = -21.68 + 1.00)
Location | 10,078,681 – 10,078,781 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -22.59 |
Consensus MFE | -17.43 |
Energy contribution | -17.91 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.09 |
Mean z-score | -2.17 |
Structure conservation index | 0.77 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923666 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10078681 100 - 22224390 ------------CGCAUGCGCAAUAGCGCGCAUUAAAUAAUUUAUACAAAAAUGCACAGAAAAUUAACAAAUUUGAAAACGCUGUUGCAUGAUAUAAUAAUCCGGCU------GCCUG-- ------------.(((.(((((((((((.(((((................))))).((((...........))))....)))))))))..(((......)))..)))------))...-- ( -22.09) >DroSec_CAF1 4935 100 - 1 ------------CGCAUGCGCAACAGCGCGCAUUAAAUAAUUUAUACAAAAAUGCACAGAAAAUUAACAAAUUUGAAAACGCUGUUGCAUGAUAUAAUAAUCCGGCU------GCCUG-- ------------.(((.(((((((((((.(((((................))))).((((...........))))....)))))))))..(((......)))..)))------))...-- ( -23.99) >DroSim_CAF1 4685 100 - 1 ------------CGCAUGCGCAACAGCGCGCAUUAAAUAAUUUAUACAAAAAUGCACAGAAAAUUAACAAAUUUGAAAACGCUGUUGCAUGAUAUAAUAAUCCGGCU------GCCUG-- ------------.(((.(((((((((((.(((((................))))).((((...........))))....)))))))))..(((......)))..)))------))...-- ( -23.99) >DroEre_CAF1 4987 106 - 1 ------------CGCAUGCGCAACAGCGCGCAUUAAAUAAUUUAUACAAAAAUGCACAGAAAAUUAACAAAUUUGAAAACGAUGUUGCAUGAUAUAAUAGUCCGGCUGCCGCUGCCUG-- ------------.(((.(((...((((.((.((((......(((((.....(((((((.....((((.....))))......)).)))))..))))))))).)))))).))))))...-- ( -18.50) >DroPer_CAF1 4548 113 - 1 UGGGGUCGGGGUAACAUGCGCAACAACGCGCAUUAAAUAAUUUAUACAAAAAUGCACACAAAAUUAACAAAUUUCAAA-UUAUGUUGCAUGAUAUAAUAAUCCGGCU------GACGACU ...(((((((.....((((((......))))))........(((((.....(((((.(((.((((...........))-)).))))))))..)))))...)))))))------....... ( -24.40) >consensus ____________CGCAUGCGCAACAGCGCGCAUUAAAUAAUUUAUACAAAAAUGCACAGAAAAUUAACAAAUUUGAAAACGCUGUUGCAUGAUAUAAUAAUCCGGCU______GCCUG__ ...................(((((((((.(((((................))))).....(((((....))))).....)))))))))...............(((.......))).... (-17.43 = -17.91 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:52 2006