Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,076,295 – 10,076,395 |
Length | 100 |
Max. P | 0.619129 |
Location | 10,076,295 – 10,076,395 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 71.40 |
Mean single sequence MFE | -16.09 |
Consensus MFE | -4.92 |
Energy contribution | -5.58 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.31 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10076295 100 + 22224390 AGAAU--UAGCCUAGGAAAAAAAAUACAUAACGAUAGA-AUAGAAGAUAGUGAAAAA----------AAAAACAAUUCAUUUGGUCUAACUAACUAGGCGAGCUGUGGAUGCA .....--..((((((................(....).-.((((....((((((...----------........))))))...)))).....))))))..((.......)). ( -16.10) >DroPse_CAF1 2180 86 + 1 UCUAC--UAGCCUAUGAAAAAAAAUAUA-----AUAG--AUAGUUGAUAGAA---------------AAAAAUAACUAAUUUGGUCUAGCUAACUAAGCCGGU---AGAGAGA (((((--..((((((.............-----))))--.((((((.((((.---------------..((((.....))))..))))..)))))).))..))---))).... ( -18.22) >DroSec_CAF1 2622 101 + 1 AGGAU--UAGCCUAGGAAAAAAAAUACAUAACGAUAGA-AUAGACGAUGGUGAAAAAA---------AAAAACAAUUCAUUUGGUCUAACUAACUAGGCGAGCUGUGGAUGCA .....--..((((((................(....).-.(((((.(.((((((....---------........))))))).))))).....))))))..((.......)). ( -18.20) >DroEre_CAF1 2330 98 + 1 AGGAU--UAGCCUAGGAAAAAAAAUACAUAACGAUAGA-AUAGAAGAUAGUGAAAAA------------AAACAAUUCAUUUGGUCUAACUAACUAGGCGAGCUGCGGAUGCA .....--..((((((................(....).-.((((....((((((...------------......))))))...)))).....))))))..((.......)). ( -16.30) >DroAna_CAF1 14563 104 + 1 AGGAUUUUAGCCUAGGAAAAA-AAUACAUAACAAUAGAGGUAGGGGAUAGAAAAAAAAAAACAAAAAAAAAGUAAUUCAUUUGGUCUAACUAACUAGGCGGAC--------AA .........((((((......-..(((.((....))...)))..((.((((..(((.......................)))..)))).))..))))))....--------.. ( -11.80) >DroPer_CAF1 2407 86 + 1 UCUAC--UAGCCUAUGAAAAAAAAUAUA-----AUAG--AUAGUUGACAGAA---------------AAAAAAAACUAAUUUGGUCUAGCUAACUAAGCCGGU---AGAGAGA (((((--..((((((.............-----))))--.((((((.((((.---------------.(((........)))..))).).)))))).))..))---))).... ( -15.92) >consensus AGGAU__UAGCCUAGGAAAAAAAAUACAUAACGAUAGA_AUAGAAGAUAGAAAAAAA__________AAAAACAAUUCAUUUGGUCUAACUAACUAGGCGAGC___GGAUGCA .........((((((...................((....))......................................((((.....)))))))))).............. ( -4.92 = -5.58 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:51 2006